PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G1041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 356aa MW: 38757.9 Da PI: 4.7978 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.7 | 4.9e-16 | 212 | 248 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ Gh_A01G1041 212 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 248 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.0E-5 | 73 | 108 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 11.805 | 73 | 108 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.5E-9 | 77 | 107 | IPR010399 | Tify domain |
Pfam | PF06203 | 9.4E-14 | 141 | 183 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.55 | 141 | 183 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.88 | 206 | 265 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.3E-11 | 206 | 259 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.23E-11 | 208 | 258 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.7E-15 | 210 | 253 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.07E-16 | 211 | 255 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 212 | 239 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.9E-14 | 212 | 248 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MAAANPRPLQ VRPFEEHARG TMQIDDDDGD YEDDAMDDVE DANINSVNVA EHGMGLIGRV 60 IGGGGAAGGG VVRALRTSEL TLSFEGEVYV FPAVTSEKVQ AVLLLLGGRH IPTGVPSIEV 120 PFDQNNMGVA DVSKRSNLSR RIASLVRFRE KRKERCFEKK IRYTVRKEAA QRMHRKNGQF 180 ASVKESTSPS SWDSSHIGFQ DGTRPETAIR SCQHCGVSEN NTPAMRRGPA GPRTLCNACG 240 LMWANKGTLR DLSKGGRNIS LEQSEPETPI EVKPSIVEGD LSANRDENGN PSKDLTNRSN 300 NASVNPDEED LHESAEDLTN PLSMGIAHSA EDDKQEPPVE LTNPSDTEID IPPSFD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016701860.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X2 | ||||
TrEMBL | A0A1U8KHD0 | 0.0 | A0A1U8KHD0_GOSHI; GATA transcription factor 24-like isoform X2 | ||||
STRING | Gorai.002G138300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12294 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 2e-58 | ZIM-like 1 |