PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 946aa MW: 104260 Da PI: 5.0477 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.1 | 2e-24 | 150 | 251 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F ++++ +l Gh_A01G0908 150 FCKTLTASDTSTHGGFSVPRRAAEKLfpsldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQL 244 99*********************999*****9555554.49************************************************..4577778 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ Gh_A01G0908 245 LVGVRRA 251 *****97 PP | |||||||
2 | Auxin_resp | 113.5 | 1.9e-37 | 276 | 359 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPr+++seFv+++ +++k+++ ++vsvGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ Gh_A01G0908 276 AAHAAANRSPFTIFYNPRSCPSEFVIPLPRYRKSVYgSQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 359 79**********************************99********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.68E-47 | 137 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-42 | 144 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.47E-22 | 149 | 250 | No hit | No description |
Pfam | PF02362 | 7.0E-22 | 150 | 251 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-24 | 150 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.183 | 150 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-32 | 276 | 359 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.7E-9 | 825 | 915 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.573 | 829 | 913 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 6.21E-9 | 831 | 908 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 946 aa Download sequence Send to blast |
MGSVVEEKIK QGGLVNVGAQ STLLEEMKLL KEMQDQSGTR KAINSELWHA CAGPLVSLPQ 60 VGSLVYYFPQ GHSEQQVAVS TKRMATSQIP NYPNLPSQLM CQVHNVTLHA DRDTDEIYAQ 120 MSLQPVNSEK DVFPIPDFGL KLSKHPNEFF CKTLTASDTS THGGFSVPRR AAEKLFPSLD 180 YSMQPPTQEL VVRDLHDNTW TFRHIYRGQP KRHLLTTGWS LFVGSKRLRA GDSVLFIRDE 240 KSQLLVGVRR ANRQQTTLPS SVLSADSMHI GVLAAAAHAA ANRSPFTIFY NPRSCPSEFV 300 IPLPRYRKSV YGSQVSVGMR FGMMFETEES GKRRYMGTIV GISDLDPLRW PGSKWRNLQV 360 EWDEPGCNDK QNRVSAWEIE TPESLFIFPS LTSSLKRPLY PGFSGAESEW GSLMKRPLLQ 420 FPENGNGNLP YSMSNLCSEQ LMKMMLKPQL VNHPGIFASP LQQIADVKIP PLEEMKNLQS 480 KSHPKPQVIQ SENMLIENQN LSHPVPDHPD PITSNMSKIN ANWNPHPANI LTQAGTGSSN 540 EKLKLESKHS AEQLTSTSEC NEEKLVASTV NTTMSNQLSF PTQPQIPLHV QNNPWSIQSQ 600 LDSSVLQAHQ MLVSQADIST LNSFLPFSDT DEWTSNLSSC QPLSGAYKSP GPIPMVGLQD 660 SSAVFPVETD DSLTTVGEEI WDPKLNSCRV SSQADQLASF TQQDPCSLNS GGVRDLSDDS 720 NNQSGIYSSC LNIDVSNGCS TVIDPFVSSA ILDEFCSLKD ADFQNPSDCL VGNFGSCQDV 780 QSQITSASLA DSQAFSRQDL PDSSGGNIDF DDSGLLQNNS WKQTAPRVRT YTKVQKAGSV 840 GRSIDVTSFK NYDELISAIE CMFGLKGLLD DPRGSGWKLV YVDYENDVLL VGDDPWEEFV 900 GCVRCIRILS PTEVQQMSEE GMKLLNSAAT VQGINGSNSD GSNANA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 3 | 384 | 6 | 392 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In early embryo and during organ development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant with a lower expression in leaves. Detected in embryo axis, provascular tissues, procambium and some differentiated vascular regions of mature organs. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016702988.1 | 0.0 | PREDICTED: auxin response factor 5-like isoform X1 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A1U8KPS3 | 0.0 | A0A1U8KPS3_GOSHI; Auxin response factor | ||||
STRING | Gorai.002G124400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |