PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G0902

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 378aa MW: 40826.9 Da PI: 8.7641

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G0902	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	129	151	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H Gh_A01G0902 129 ACSQCGEVFPEIESLELHQAVrH 151 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.746	128	156	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	128	151	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.25E-24	153	371	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.3E-15	155	371	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEGSKVHDPS KNNNPAPPHH HQHGYSKLGS SCSSICSFRD VVHGNTRVVH RADNSPESST 60 LGQETALLRR KAVNGSSSRS LSGSTRSNNS TTTSSSSRAI QFRKLSGCYE CHTIVDPSRY 120 PSSRTSICAC SQCGEVFPEI ESLELHQAVR HAVSELGPED SGRNIVEIIF KSSWLKKDNP 180 ICKIERILKV HNNQRTIQRF EDCRDAVKTR ALNSTRKNPR CAADGNELLR FHCTTLSCSL 240 GARGSSSLCG SIPGCGVCTI IRQGFQNKGE GTAPAAEFKG VVTTASSGRA HDSIKRTDGR 300 RAMLVCRVIA GRVKRVADEA PPLEDENSSG VSSSAGSYDS VAAYAGVYSN LEELVVFNPR 360 AILPCFVVIY KALESGVI

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEGSKVHDPS KNNNPAPPHH HQHGYSKLGS SCSSICSFRD VVHGNTRVVH RADNSPESST  60
LGQETALLRR KAVNGSSSRS LSGSTRSNNS TTTSSSSRAI QFRKLSGCYE CHTIVDPSRY  120
PSSRTSICAC SQCGEVFPEI ESLELHQAVR HAVSELGPED SGRNIVEIIF KSSWLKKDNP  180
ICKIERILKV HNNQRTIQRF EDCRDAVKTR ALNSTRKNPR CAADGNELLR FHCTTLSCSL  240
GARGSSSLCG SIPGCGVCTI IRQGFQNKGE GTAPAAEFKG VVTTASSGRA HDSIKRTDGR  300
RAMLVCRVIA GRVKRVADEA PPLEDENSSG VSSSAGSYDS VAAYAGVYSN LEELVVFNPR  360
AILPCFVVIY KALESGVI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9957	0.0	ovule

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	78325513	0.0

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC193778	8e-41	AC193778.1 Solanum lycopersicum chromosome 4 clone C04HBa0101P06, complete sequence.
GenBank	CU222538	8e-41	CU222538.4 S.lycopersicum DNA sequence from clone LE_HBa-331L22 on chromosome 4, complete sequence.
GenBank	HG975516	8e-41	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017624312.1	0.0	PREDICTED: uncharacterized protein LOC108467979
TrEMBL	A0A2P5X1S1	0.0	A0A2P5X1S1_GOSBA; Uncharacterized protein
STRING	Gorai.002G123600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-153	C2H2-like zinc finger protein