PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G0844

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 906aa MW: 100919 Da PI: 6.9057

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G0844	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.6	1.4e-29	587	638	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Gh_A01G0844 587 AEKTITLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 638 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.757	577	658	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-26	590	638	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.83E-23	809	896	No hit	No description
PROSITE profile	PS51745	26.329	810	893	IPR000270	PB1 domain
SMART	SM00666	5.2E-28	810	893	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.1E-22	811	890	No hit	No description
CDD	cd06407	4.80E-41	812	891	No hit	No description
Pfam	PF00564	3.0E-19	812	892	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence Send to blast
MDFDYMDELL LDGCWLETTQ GSDFLNPTLP FSNNFFDPAF AWPTTESNAG DLGGGLSHQG 60 ENQRSLLSGN LHWNEAQGES LVSPHFSQSH SLDSDCVTDG SEPNRRWWIR PSVNSGPATT 120 VMQRLIQALG YIKAFGKEKD VLVQLWLPVN RGGRRFLTTS EQPFSLDSKS QKLASYRNIS 180 VKYNFPAEED SKDMAGLPGR VFLSKVPEWT PDVRFFKRDE YPRVGHAQEH DVRGTFALPV 240 FEQGSGTCLG VIEVVMTTEK IKIQPELESV CKALEAVNLR SSITSSTQNI KAYSNCYQAA 300 LPEIKELLRC ACETHRLPLA QAWVPCIQQG KEGCRHSSEN YVHCVSTVDD ACCIADPSIQ 360 GFHEACSEHH LLKGQGVVGR AFMTNQPCFM TDITSFKKTE YPLAHHAMMF NLHAAVAIRF 420 RSIHTGKADF VLEFFLPAHC RDPEGQRKML NSLSIIIQQV CCSLRVVTDK ELVEETDLAV 480 SEVVAPSDGL PIREESLKQQ CTRHHSKKLS GESSSCLTKV QQSSNTALVL EKEKPRPMLD 540 EKIPEVEQHQ QHISLQESVE CGDSTFNEIS FSSVTMGKTS EKRRSKAEKT ITLQVLRQYF 600 AGSLKDAAKS LGVCPTTLKR ICRQHGINRW PSRKIKKVGH SLQKLQHVID SVQGASGAFH 660 ISNFYANFPE LASPKLLGNS ALSTSPLNDK PKQINIQPEG GNFLSQGALS NSPSSSCSQS 720 SSSSHSCSSG THRPSNFNMP GKEDHIIGDN SGDGELKRVK SDVELHALSQ EGPKLFPRSQ 780 SLRSLKEQLI CDNLQPISKN TSPIAHDLEA QRVKVTYGDE KIRFRMQSKW RFKDLLHEIA 840 RRFNIDDISR FDLKYLDDDS EWVLLTCDAD MVECIDVCGS SQGNTIKLSL QVSHHHLDQF 900 SGSTGS

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence Send to blast

MDFDYMDELL LDGCWLETTQ GSDFLNPTLP FSNNFFDPAF AWPTTESNAG DLGGGLSHQG  60
ENQRSLLSGN LHWNEAQGES LVSPHFSQSH SLDSDCVTDG SEPNRRWWIR PSVNSGPATT  120
VMQRLIQALG YIKAFGKEKD VLVQLWLPVN RGGRRFLTTS EQPFSLDSKS QKLASYRNIS  180
VKYNFPAEED SKDMAGLPGR VFLSKVPEWT PDVRFFKRDE YPRVGHAQEH DVRGTFALPV  240
FEQGSGTCLG VIEVVMTTEK IKIQPELESV CKALEAVNLR SSITSSTQNI KAYSNCYQAA  300
LPEIKELLRC ACETHRLPLA QAWVPCIQQG KEGCRHSSEN YVHCVSTVDD ACCIADPSIQ  360
GFHEACSEHH LLKGQGVVGR AFMTNQPCFM TDITSFKKTE YPLAHHAMMF NLHAAVAIRF  420
RSIHTGKADF VLEFFLPAHC RDPEGQRKML NSLSIIIQQV CCSLRVVTDK ELVEETDLAV  480
SEVVAPSDGL PIREESLKQQ CTRHHSKKLS GESSSCLTKV QQSSNTALVL EKEKPRPMLD  540
EKIPEVEQHQ QHISLQESVE CGDSTFNEIS FSSVTMGKTS EKRRSKAEKT ITLQVLRQYF  600
AGSLKDAAKS LGVCPTTLKR ICRQHGINRW PSRKIKKVGH SLQKLQHVID SVQGASGAFH  660
ISNFYANFPE LASPKLLGNS ALSTSPLNDK PKQINIQPEG GNFLSQGALS NSPSSSCSQS  720
SSSSHSCSSG THRPSNFNMP GKEDHIIGDN SGDGELKRVK SDVELHALSQ EGPKLFPRSQ  780
SLRSLKEQLI CDNLQPISKN TSPIAHDLEA QRVKVTYGDE KIRFRMQSKW RFKDLLHEIA  840
RRFNIDDISR FDLKYLDDDS EWVLLTCDAD MVECIDVCGS SQGNTIKLSL QVSHHHLDQF  900
SGSTGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017638652.1	0.0	PREDICTED: protein NLP5-like
Refseq	XP_017638653.1	0.0	PREDICTED: protein NLP5-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A2P5X3N4	0.0	A0A2P5X3N4_GOSBA; Uncharacterized protein
STRING	Gorai.002G115800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein