PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0796
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 264aa    MW: 29685.6 Da    PI: 6.305
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0796genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.18.5e-56821861102
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+f+leltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi
  Gh_A01G0796  82 QLQMFWANQmheIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFVLELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 179
                  89******988889************************************************************************************ PP

        NF-YC  96 vprdelk 102
                  +prdelk
  Gh_A01G0796 180 IPRDELK 186
                  ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.97E-3461176IPR009072Histone-fold
PfamPF008084.4E-21104167IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.2E-37105182IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDQREKTQQQ QQQPVMGVVP GAGQMGYSTA YQTASMVASG TTGVAVPIQT QPSATFSSSP  60
HQLAYQQAQH FHHQQQQQQQ QQLQMFWANQ MHEIEQTTDF KNHSLPLARI KKIMKADEDV  120
RMISAEAPVI FAKACEMFVL ELTLRSWIHT EENKRRTLQK NDIAAAISRT DVFDFLVDII  180
PRDELKEEGL GVTKATIPLV GSPADIPYYY VPQHPVGSLG MIMGKPIDQA ALYPGQQPRP  240
PMAFMPWPQG QPQQQQSEQQ QSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5890182395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.25700.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016701414.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_016755369.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like, partial
RefseqXP_017638968.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ655V55e-83NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0B0NLR00.0A0A0B0NLR0_GOSAR; Nuclear transcription factor Y subunit C-2-like protein
TrEMBLA0A1U8KL310.0A0A1U8KL31_GOSHI; nuclear transcription factor Y subunit C-2-like
STRINGGorai.002G110200.11e-155(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-82nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]