PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A01G0650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25796.8 Da PI: 8.2172 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 9.8e-21 | 34 | 84 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrd ++ ++r++lg+f++aeeAa+a++ a++ l+g Gh_A01G0650 34 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAARAYDTAARTLRG 84 68********.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-13 | 34 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.30E-32 | 34 | 94 | No hit | No description |
SMART | SM00380 | 2.8E-37 | 35 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.788 | 35 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 35 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 35 | 94 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.9E-11 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MRRGRGAAAA APAAAANAVA RRPALQPSGS IKEPRYRGVR KRPWGRFAAE IRDPWKKTRV 60 WLGTFDSAEE AARAYDTAAR TLRGPKAKTN FPINSSNIPA FPFETNHHHN EGFIDQRRLY 120 PMGDFHDPEV NPQRPTRSSM SSTVESTVES FSGPRPAQPP QKSADFAVVS TRKYYPRPPP 180 VEPEDCHSDC DSSSSVVDDG DIALSSCRKT LPFDLNFPPL DEDEDLQCTA LCL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 35 | 92 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.9388 | 0.0 | boll| leaf| ovule| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017638633.1 | 1e-141 | PREDICTED: ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9LDE4 | 5e-51 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A0D2M8L5 | 1e-132 | A0A0D2M8L5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G092900.1 | 1e-133 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20310.1 | 1e-35 | ethylene response factor 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|