PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0639 | ||||||||
Common Name | WRKY1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 524aa MW: 57629.1 Da PI: 7.443 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.5e-30 | 282 | 340 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Gh_A01G0639 282 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILVTTYEGNHNHP 340 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-33 | 266 | 342 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.89E-28 | 274 | 342 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.861 | 276 | 342 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 281 | 341 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 283 | 340 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MEPVDPHIVS LVQSSDGIKR VVNEMDFFAH DRSSKQHDKA DYDVHHHHVK TESEHHGADQ 60 DDDVNTGLNL LTTNTASEKS SVAGDGITSS QNLKEKQRVN QLADIRAELD RINAENQRLK 120 LTLNQVNSNY YALQMHLVSL TQRHRNRIAE SSEANTQMNR PIEEKKHGEG MVARQFMDLV 180 QTETKAEKDE LSESSSEDRC QELSGSPGNT IVESMERRQK NNKSRNQRED TPEGLPHPAG 240 WLPNKGPKFN TSKDNEQAQQ TMAMIRKARV SVRARSEASM ISDGCQWRKY GQKMAKGNPC 300 PRAYYRCTMA TGCPVRKQVQ RCAEDRTILV TTYEGNHNHP LPPAAMAMAS TTSAAASTLL 360 SGSMPSADHG IMNSNIVPKG MLPGSPNLIT LSASAPFPTV TLDLTHPPNQ RPLHQLHPLS 420 PNWPHNISSL PAHLLGHPIY NQSKLLGTYL SSQGNNELPV HLSQNQMQGH PMVDTAATAA 480 AITADPNFTA ALVAAITSII GNSHRDNSGN NNSTTSRNTG DNNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 268 | 344 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031069 | 0.0 | KF031069.1 Gossypium hirsutum WRKY transcription factor 1 (WRKY1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314064.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-117 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A059Q912 | 0.0 | A0A059Q912_GOSHI; WRKY transcription factor 1 | ||||
STRING | Gorai.002G091300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19246 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 5e-83 | WRKY family protein |