PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 537aa MW: 58942.2 Da PI: 7.0105 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l+d+v+ +G g+W+++ + g+ R++k+c++rw ++l Gh_A01G0631 32 KGPWTAAEDAVLADYVRTHGEGNWNAVQKNTGLARCGKSCRLRWANHL 79 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++v++++++G++ W++ a ++ gRt++++k++w++ Gh_A01G0631 85 KGAFSPEEERIIVELHAKMGNK-WARMATQLP-GRTDNEIKNYWNT 128 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.158 | 27 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-28 | 31 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-12 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-14 | 32 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 33 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.65E-10 | 34 | 79 | No hit | No description |
PROSITE profile | PS51294 | 25.567 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-16 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 85 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-11 | 87 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-25 | 87 | 133 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MMMMGGNNQI TTQNEGGGSN NGGGEGGIML KKGPWTAAED AVLADYVRTH GEGNWNAVQK 60 NTGLARCGKS CRLRWANHLR PNLKKGAFSP EEERIIVELH AKMGNKWARM ATQLPGRTDN 120 EIKNYWNTRV KRRQRQGLPL YPPEIQPLYS QHQRNQHRSL PSTPLASPTA TSTSSFSFQT 180 PPNPSSSTTL HGLILTPAHP LHIPRSASSH VLYNPQTPPP LHSASAVSTP CPSPLPSSSP 240 STPTPVSPLQ SPHKPAFSTL PLFDSSTSNT CNNNINANNA INNNTFPSDF FFPRATPPLQ 300 TPMRYKRFRP DVSESINNER HNNSISVNGG CNSTSSSFMS QYPPFQKTSF FNSHATLNVT 360 TSTPLTSPHY SPSYTLDPVT LDLASSSRIL ADHQNFDNGQ FISTPGFDYT PKTDELPSNQ 420 FVSLDGTSEV TFDTKGNCNY ISNDQNNHHQ DLSIHFGGGG LLDDMLEEAQ LLAGDNYILR 480 RESCLDGFNT SSDGLTSGKE ETVTDQEINA TQEEYSRLLN AIPSSMPMPD WYNNCGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 30 | 133 | 5 | 107 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the pollen tube nucleus during pollen tube growth through the pistil. {ECO:0000269|PubMed:23791732}. | |||||
Uniprot | TISSUE SPECIFICITY: Accumulates in pollen grains and pollen tube (PubMed:14500793, PubMed:23791732, PubMed:24278028). Mostly expressed in mature pollen grains, and, to a lower extent, in inflorescences and siliques (PubMed:24278028). {ECO:0000269|PubMed:14500793, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578703 | 6e-95 | JX578703.1 Gossypium hirsutum clone NBRI_GE10781 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016702479.1 | 0.0 | PREDICTED: transcription factor MYB86 | ||||
Swissprot | Q9S773 | 3e-77 | MYB97_ARATH; Transcription factor MYB97 | ||||
TrEMBL | A0A1U8KP37 | 0.0 | A0A1U8KP37_GOSHI; transcription factor MYB86 | ||||
STRING | Gorai.002G089900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 4e-70 | myb domain protein 101 |
Publications ? help Back to Top | |||
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