PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G0544

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 474aa MW: 52093.6 Da PI: 7.4042

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G0544	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	6.9e-06	362	400	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Gh_A01G0544 362 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 400 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.595	351	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.14E-10	361	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.24E-7	361	405	No hit	No description
SMART	SM00353	0.0023	362	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-9	365	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MADEFNTGTN WWDSSRTAGS SSSSSGLNNS FGWATEMVDI KAARSPMDSV SSVSGSSVVF 60 HDNPKLQVGL GPDHHHHHHH HHHPPSDLQM MGLGLPSQAM DWNQALLRGD KSEVSFRSML 120 QDHNLNASNA NYQHQQRETG GIGSSQLHWR DKMFTGDAGL KQIGRGFSLD QSQFSPHGSS 180 SDSTVTCQSL PSSFQMDSST ALYGSPSTIL QGLLGSENQP QQQQQQSSYE NRSMNYQYGA 240 AAPTSYGMNT NDQLLPNALS KVPQFLRSSP PKQQLHGQLH FSNNAPFWNP SAAAAASMTD 300 HVRPGFFPSL QTQFQTGTFD EKPKNISEVR ETSTVVKKSG NEPASTKRPR NETPSTMPAF 360 KVRKEKMGDR ITALQQLVSP FGKTDTASVL SEAIEYIKFL HAQVSQVLST PYMKNEATIQ 420 HPQQNPEKSK DPAEGPKQDL RSRGLCLVPV SSTFPLTNES PVDFWTPTFG GTFR

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MADEFNTGTN WWDSSRTAGS SSSSSGLNNS FGWATEMVDI KAARSPMDSV SSVSGSSVVF  60
HDNPKLQVGL GPDHHHHHHH HHHPPSDLQM MGLGLPSQAM DWNQALLRGD KSEVSFRSML  120
QDHNLNASNA NYQHQQRETG GIGSSQLHWR DKMFTGDAGL KQIGRGFSLD QSQFSPHGSS  180
SDSTVTCQSL PSSFQMDSST ALYGSPSTIL QGLLGSENQP QQQQQQSSYE NRSMNYQYGA  240
AAPTSYGMNT NDQLLPNALS KVPQFLRSSP PKQQLHGQLH FSNNAPFWNP SAAAAASMTD  300
HVRPGFFPSL QTQFQTGTFD EKPKNISEVR ETSTVVKKSG NEPASTKRPR NETPSTMPAF  360
KVRKEKMGDR ITALQQLVSP FGKTDTASVL SEAIEYIKFL HAQVSQVLST PYMKNEATIQ  420
HPQQNPEKSK DPAEGPKQDL RSRGLCLVPV SSTFPLTNES PVDFWTPTFG GTFR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583456	2e-76	JX583456.1 Gossypium hirsutum clone NBRI_GE16500 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016702641.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X3
Swissprot	Q8GXT3	6e-87	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A1U8KJD0	0.0	A0A1U8KJD0_GOSHI; transcription factor bHLH123-like isoform X3
STRING	Gorai.002G079200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-79	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]