PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0428
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 354aa    MW: 39843.9 Da    PI: 8.0835
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0428genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox201.1e-061374655
                 S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
     Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                 +ft++++  +e++ ++  n+ p +e  e LA+k            ++ +qV +WFqNrR+  
  Gh_A01G0428 13 RFTQTEVADMETVLQEhhNQMPAREILESLAEKFsesterkgrtIVQFKQVWNWFQNRRYAI 74
                 6999**********9777999*********************999999***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-11476IPR009057Homeodomain-like
SMARTSM003890.001781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-71380IPR009057Homeodomain-like
CDDcd000860.001261375No hitNo description
PROSITE profilePS500719.8471377IPR001356Homeobox domain
PfamPF167194.1E-39138264IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQTEVA DMETVLQEHH NQMPAREILE SLAEKFSEST ERKGRTIVQF  60
KQVWNWFQNR RYAIRAKSSK VPGKLNVTSM PRDDSNPVRN VLQPVAAPMP PPMAAPMSTA  120
MPATTVPVAT RHMSESFMEF EAKSSRDGAC YDVATFLAHR YMETGDPEVQ VRFAGFGPEE  180
DEWVKVRKHL RQRSLPCEAS ECVAVLPGDL ILCFQEGKDQ ALYFDAHVLD AQRRRHDVRG  240
CRCRFLVRYD HDQSEEIVPL RKVCRRPETD YRLQQLHASS NTEQKPSTNP PTATTPTETM  300
QKQQNRDVSR TPAPVGVSHA NVFSIAAQTA NPESKNAAFT TTIATSTPAQ NMQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-451382684134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-451382684134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-451382684134SHH1 SAWADEE
4iur_B2e-451382684134SHH1 SAWADEE
4iut_A2e-451382684134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-451382684134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-451382684134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-451382684134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-451382684134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-451382684134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.197981e-31boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5843392e-72JX584339.1 Gossypium hirsutum clone NBRI_GE17618 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016701718.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ71e-152SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1U8KL540.0A0A1U8KL54_GOSHI; protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
TrEMBLA0A2P5YLH90.0A0A2P5YLH9_GOSBA; Uncharacterized protein
STRINGEOY131340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-131sequence-specific DNA binding transcription factors;sequence-specific DNA binding