PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | BES1 | ||||||||
Protein Properties | Length: 325aa MW: 35136.1 Da PI: 8.4665 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 215.9 | 9.2e-67 | 2 | 145 | 1 | 150 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqssl 98 ++++r ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp e+++++g sa++sp+ss++ Gh_A01G0360 2 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPVEHMDIVGGSATVSPCSSYH--- 96 5899*******************************************************************************************... PP DUF822 99 kssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsssl 150 +sp++sy++sp+sssfpsp+s++ + + + +sl+p+l++ls++sss+ Gh_A01G0360 97 -----PSPRASYNPSPASSSFPSPASSSYVVNPNGdvNSLFPWLKNLSSASSSA 145 .....*******************9999887766577**********9987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.5E-66 | 3 | 139 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCNEAG 60 WTVEPDGTTY RKGCKPVEHM DIVGGSATVS PCSSYHPSPR ASYNPSPASS SFPSPASSSY 120 VVNPNGDVNS LFPWLKNLSS ASSSASSSKR PYSYIHGGSI SAPVTPPLSS PTARTPRMKN 180 DWEDQSVLPG WSAQQHSFLP SSTPPSPGRQ IVPDPEWFSG LQTPHSRPTS PTFSLVSSNP 240 FGFKEEVLAG GGSRMWTPGQ SGTFSPAIAA GLDQTADVPM SEVISDEFAF GSNATGLVKP 300 WEGERIHEEC GSDDLELTLG SSKTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-23 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-23 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-23 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-23 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15265 | 0.0 | boll| ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243116 | 0.0 | AC243116.1 Gossypium raimondii clone GR__Ba0066P11-hvl, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016702634.1 | 0.0 | PREDICTED: BES1/BZR1 homolog protein 4-like isoform X1 | ||||
Refseq | XP_016702636.1 | 0.0 | PREDICTED: BES1/BZR1 homolog protein 4-like isoform X2 | ||||
Swissprot | Q9ZV88 | 1e-140 | BEH4_ARATH; BES1/BZR1 homolog protein 4 | ||||
TrEMBL | A0A1U8KJC4 | 0.0 | A0A1U8KJC4_GOSHI; BES1/BZR1 homolog protein 4-like isoform X1 | ||||
STRING | Gorai.002G052400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1917 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 1e-124 | BES1/BZR1 homolog 4 |