PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 36280 Da PI: 9.0253 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.6 | 5.3e-49 | 22 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 pGfrFhPtdeelv +yLk+kve+k+l++ e ik++diyk++PwdLpk +v + +e+e yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v++++ Gh_A01G0267 22 LPGFRFHPTDEELVGFYLKRKVEKKPLRF-ELIKQIDIYKFDPWDLPKasMVGGgGESESYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYAQT 118 59*************************99.99***************5343333366699************************************94 PP NAM 97 gel.....vglkktLvfykgrapkgektdWvmheyrl 128 g + +glkktLv+y+g a kg+ktdW+mhe+rl Gh_A01G0267 119 GDHqglacIGLKKTLVYYRGAAGKGTKTDWMMHEFRL 155 44346677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 51.159 | 21 | 188 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.03E-51 | 22 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-25 | 23 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MMNVDDVQGV NDNKADHEDI QLPGFRFHPT DEELVGFYLK RKVEKKPLRF ELIKQIDIYK 60 FDPWDLPKAS MVGGGGESES YFFCKRGRKY RNSVRPNRVT GSGFWKATGI DKPVYAQTGD 120 HQGLACIGLK KTLVYYRGAA GKGTKTDWMM HEFRLPYPHE STTVVAFSNP KFAAQEAEVW 180 TICRIFKRNS SLKKHKQDWR QVTAKRASLT TAPTSQTCSV ESKSNVQGKY ITFGSPFIVD 240 YHHHNDEEKP SMLVNHHNIS GKNQSQWHVT DRMSSAAMAQ IPSSMAASSS SFSNDDFFTE 300 ANWDELKSVV EFALEPFPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-45 | 23 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-45 | 23 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-45 | 23 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-45 | 23 | 194 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-45 | 23 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-45 | 23 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-45 | 23 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-45 | 23 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-45 | 23 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-45 | 23 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-45 | 23 | 194 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-45 | 23 | 194 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-45 | 23 | 194 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-45 | 23 | 194 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847219 | 0.0 | KC847219.1 Gossypium hirsutum NAC domain protein NAC42 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016720197.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Refseq | XP_017618496.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1U8M082 | 0.0 | A0A1U8M082_GOSHI; transcription factor JUNGBRUNNEN 1-like | ||||
STRING | Gorai.002G036700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-81 | NAC domain containing protein 42 |