PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0151
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 363aa    MW: 39595.2 Da    PI: 5.3819
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0151genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.91.3e-2850144186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rWt+qe+l+Li+++r  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++es+s +++ ++l+
  Gh_A01G0151  50 RWTRQEILVLIQGKRVAENRVRRGRaaglafgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESNIREESESFWVMRNDLR 144
                  8**********************97778888888***************************************************99*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-1250140No hitNo description
PROSITE profilePS500906.450116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.0E-550115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MASEQLSLAA TPDPIDGRKE AVNAAINGVE SRPVSVDCGD DVSKAPRLPR WTRQEILVLI  60
QGKRVAENRV RRGRAAGLAF GSGQVEPKWA SVSSYCKRHG VNRGPVQCRK RWSNLAGDFK  120
KIKEWESNIR EESESFWVMR NDLRRERKLP GFFDKEVYDI LDGAAAVSSA VEIPDSVVAP  180
ALALALTPTP AVQDTAEDNE AVFDSGRSAA AEDGLFSDFE QDDGAGSPEK VELPVSADAG  240
KSVPAPIPIS EQQYQQQPAI PGSKSQGTTK EKHPTSNPEV GSASQEARKR KRTVTNGDEE  300
PDNSPQYHLI DVLEKNGKML VAQLEAQNTN LQQERQQRKD HADSLVAVLN KLADALGRIA  360
DKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.28770.0boll| ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638976.10.0PREDICTED: trihelix transcription factor ASR3
SwissprotQ8VZ201e-119ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A0B0NPR30.0A0A0B0NPR3_GOSAR; Trihelix transcription factor GTL1-like protein
TrEMBLA0A2P5WHS10.0A0A2P5WHS1_GOSBA; Uncharacterized protein
STRINGGorai.002G021600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-119Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]