PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A01G0135

Common Name

ZFP1

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 339aa MW: 38330 Da PI: 7.6394

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A01G0135	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.4e-11	112	135	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +C++f+r+G C++Gd C FaHg Gh_A01G0135 112 STICSDFRRGGGCPRGDDCEFAHG 135 569********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.75E-7	108	139	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.9E-6	109	136	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.314	109	137	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-8	110	137	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.0E-9	112	135	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-4	142	173	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6	145	168	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.052	145	169	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MTTVYDPSHH LTSKKLCFKD LEIPPRKKQL HCCHNAAAME LPHHEARLHK YLPSNEDDDG 60 TDDPYGTDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA RRRDPTRYQY SSTICSDFRR 120 GGGCPRGDDC EFAHGVFECW LHPTRYRTEA CKDGKNCKRK VCFFAHSSRE LRLLPESQPP 180 YKNSDKNYNH CCLFCRSVTS SSSLSPTSTL LGLSQFSRSP SLSPPLSPLK HQQRTPRYGG 240 DRISKFGTEM TTSYDDVLLK EVMSCLGTMT LSEVPSPMAT TPNTNIPWLD VSFKGAPSMV 300 SPSGSGEYFN GGGDDEKNNG NGVVLDHDLD LGWVNELLM

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	60460511	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269\|PubMed:18487351}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269\|PubMed:18487351}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY887895	0.0	AY887895.1 Gossypium hirsutum putative CCCH-type zinc finger transcription factor (ZFP1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016751828.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9ZWA1	9e-75	C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A1U8PNC4	0.0	A0A1U8PNC4_GOSHI; zinc finger CCCH domain-containing protein 2-like
STRING	Gorai.002G020100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2987	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	4e-57	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chang G, et al. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238 [PMID:29723526]