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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A01G0053 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | B3 | ||||||||
| Protein Properties | Length: 133aa MW: 15896.7 Da PI: 9.2946 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 32.7 | 1.3e-10 | 21 | 94 | 12 | 83 |
HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
B3 12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83
++ rl++p + + + ++ ++l+++d+s +W++++i ++g v++kGW eFv a+gLk+ D +v +
Gh_A01G0053 21 ER-RLSVPTRILYLFpytT-TDHRCFDLQVKDTSDVVWSFRCIR--RDGVyakPVFSKGWLEFVYAKGLKAYDKIVVY 94
33.4788887774446642.334679****************54..33333459*******************99988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 7.9E-13 | 8 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.35E-11 | 9 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 4.66E-12 | 10 | 98 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 133 aa Download sequence Send to blast |
MKHILHMELI FSKLLTQTDI ERRLSVPTRI LYLFPYTTTD HRCFDLQVKD TSDVVWSFRC 60 IRRDGVYAKP VFSKGWLEFV YAKGLKAYDK IVVYKEKGVV EGDVPYRIEV KRKILRLMGE 120 DIWIEIEHLH LYS |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012468593.1 | 2e-86 | PREDICTED: uncharacterized protein LOC105786621 | ||||
| TrEMBL | A0A0D2QYA7 | 7e-90 | A0A0D2QYA7_GOSRA; Uncharacterized protein | ||||
| STRING | Gorai.002G006400.1 | 1e-90 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM22060 | 3 | 4 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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