PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A01G0052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 100aa MW: 11487.3 Da PI: 5.7073 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.8 | 3.5e-12 | 35 | 92 | 30 | 85 |
..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 30 keesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 ++ + l ++d +g W++++ + ++++ + v+ +GW +Fv+ ++L++gD+vv++++ Gh_A01G0052 35 CHGRIVLNVKDDEGTFWNFRCLIrtERYGPKLVIVSGWIDFVRTKDLRQGDIVVLYRE 92 34567899*************7755666666************************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 9.57E-14 | 3 | 94 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-14 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-12 | 4 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-9 | 28 | 92 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.206 | 41 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MEIFATVLTI TDIERRLSVS NGCLLLQALS HFNGCHGRIV LNVKDDEGTF WNFRCLIRTE 60 RYGPKLVIVS GWIDFVRTKD LRQGDIVVLY REEDVIAGME |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286336.1 | 1e-27 | auxin response factor 3-like | ||||
TrEMBL | A0A2P5W7I0 | 2e-66 | A0A2P5W7I0_GOSBA; Uncharacterized protein | ||||
STRING | EOX98117 | 3e-28 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM35420 | 2 | 2 |