PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS74560.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 439aa    MW: 47811.2 Da    PI: 6.3534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS74560.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13294340455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  EPS74560.1 294 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 340
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-3813191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.806290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-18293355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.77E-14293343No hitNo description
PfamPF000102.0E-10294340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-17294351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-15296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
SEFQPSGGDL GIRQTLRSIV DGSDWSYAIY WQVSKSKSGG KSALIWGDGH CQDEEEHAAV  60
ADAVADNNAL RKLVLGKLHS SLDPPEEEGK QLLLAKLDTV SEVSMFFLTS AFCIFPFDKP  120
SVPSQSFNSG RTIWISDSKA CLERYQSRSH LARIAGFETV AFVPSKSGVI ELGSKRSIPE  180
DHNVVRSAQS VVVRTTNHNN HPAKSSLTTA IPKIFGQELA GGRSSAPVNI SFSPKLEDDD  240
DDNGTDHHAA AAIGGGGEDS EAINDQSKED NSFDDQRPRK RGRKPANGRD EPLNHVEAER  300
QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITDLQ TKIGMLEAEK GRNSPPSEFD  360
VVEGHGEDSS SVVRMSWPLE SHPVSGVVKA LRQHQVTPHR STLSVTEGGE VVHTFSIRTT  420
RGADDAQVLK DQLAAALLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-27288350264Transcription factor MYC2
5gnj_B1e-27288350264Transcription factor MYC2
5gnj_E1e-27288350264Transcription factor MYC2
5gnj_F1e-27288350264Transcription factor MYC2
5gnj_G1e-27288350264Transcription factor MYC2
5gnj_I1e-27288350264Transcription factor MYC2
5gnj_M1e-27288350264Transcription factor MYC2
5gnj_N1e-27288350264Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831462.11e-172PREDICTED: transcription factor bHLH3
SwissprotA0A3Q7H2161e-147MTB3_SOLLC; Transcription factor MTB3
TrEMBLS8D5600.0S8D560_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.D00401.1.p1e-172(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-109bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]