PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS74440.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 370aa    MW: 40126.8 Da    PI: 7.8827
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS74440.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-114569327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                ++ C ++++tG+C yG rC+F+H++
  EPS74440.1 45 EPDCIYYLKTGFCGYGKRCRFNHPR 69
                799********************96 PP
2zf-CCCH41.22.7e-1391115327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++lC+++++tG+Ck+G++Ck++H++
  EPS74440.1  91 QPLCQYYMKTGICKFGATCKYHHPK 115
                 79*********************96 PP
3zf-CCCH34.92.6e-11137161327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C+++ +tG+Ck+G +CkF+H++
  EPS74440.1 137 EKECSYYVKTGQCKFGITCKFHHPQ 161
                 689********************97 PP
4zf-CCCH33.85.9e-11269290627
                 -SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                 C++++rtG+C++G++Ck++H++
  EPS74440.1 269 CQYYMRTGECRFGETCKYHHPQ 290
                 ********************97 PP
5zf-CCCH28.82e-09316339427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 + C++++ +G Ck+G++CkF H++
  EPS74440.1 316 AVCSHYSHNGVCKFGPSCKFDHPM 339
                 78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6334270IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-54269IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-94569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-64770IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-54869IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-788115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.97188116IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-1191115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-691116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-493115IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-5134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742134162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6135162IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4140160IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6263290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.305263291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6267291IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8269290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4269289IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371312340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5315341IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7316339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4317337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
EGYSGTQEME AVPVEEWVSP GGETGLEETM WELGLESGLP DRPNEPDCIY YLKTGFCGYG  60
KRCRFNHPRD RSLVMGAFRS GGGEYPERIG QPLCQYYMKT GICKFGATCK YHHPKHGVGS  120
SAPVTLNIYG YPLRLGEKEC SYYVKTGQCK FGITCKFHHP QPAAGQVLIP DALATPTIYP  180
TIQSSQQYGV YTPRPAILPG SYVSAGYGPM LITTSGVVPV PGWTPYPASP PDAAQPTVGG  240
ATIYGLSPPY AGATGKEPGF PDRPGQPFCQ YYMRTGECRF GETCKYHHPQ PREWMMGPKA  300
SFMLSPIGLP LRPGAAVCSH YSHNGVCKFG PSCKFDHPMR TLSLSYTPSS SSLTDMPVAP  360
CPIGSITASI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858954.11e-169PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-131C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLS8D4X10.0S8D4X1_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.G00186.1.p1e-169(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-127C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]