PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS74336.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 133aa    MW: 14553.3 Da    PI: 6.2541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS74336.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.00057701151255
                 HHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 
                 RR+ri +++  L ell + + ++++     Ka +L +++ Y++sLq
  EPS74336.1  70 RRERIGERMKILEELLIPgPGGNKDITgRGKAVMLDEVISYVQSLQ 115
                 9**************999673333333577***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.52858114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-869126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-770124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-670119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSGEVSHFSS PGCWDTTNRG EATNSQPQQT TEVSQTVMDM DDGHSSYVHA RAKRGDSKPP  60
IATAWVREAR RERIGERMKI LEELLIPGPG GNKDITGRGK AVMLDEVISY VQSLQQQVEF  120
LSMTLACAAT KTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028550306.12e-21transcription factor bHLH74 isoform X1
RefseqXP_028550307.12e-21transcription factor bHLH74 isoform X1
RefseqXP_028550308.12e-21transcription factor bHLH74 isoform X2
SwissprotQ9SRT23e-19BH062_ARATH; Transcription factor bHLH62
TrEMBLS8DA325e-95S8DA32_9LAMI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-21bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]