PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS74277.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRAS
Protein Properties Length: 387aa    MW: 44080.8 Da    PI: 9.4788
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS74277.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.51.1e-9683842374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                   lL +cA av+ +d+++a+ lL r+++++sp+g p +R+a++f+ +L arla++++ely+a ++++      +e l a+k++ ++ P+ ++s+++aN+
  EPS74277.1   8 NALLQRCAGAVAVRDTRAASDLLIRIRQHSSPRGGPAERVAHHFAVGLDARLAGEGTELYAASSANRIY---AAEMLRAYKALIHAAPFRRVSNMLANK 103
                 56899*******************************************************766666665...9************************** PP

        GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 ++ +a+ ++  +++H+iDf+i +G+QWp+L++ L++ ++gp +lR+Tg++ p++g   +e++ + g rLak+++++gvpfe+n+ +a+++e++++e+L+
  EPS74277.1 104 TVWRAAVEAraKKLHVIDFGILYGFQWPCLIHILSTMAGGPLKLRLTGIDFPQPGfrPAERVAQSGVRLAKYCRRFGVPFEYNA-IARKWETITVEDLK 201
                 ***99877667999****************************************9*****************************.7************* PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                 +++gE l+Vn  ++ +++++es s+      +rd+vL+l+++++P+++++   +  ++s+ F++rf eal  ys lfd+l+a++ re+e+r ++E +l 
  EPS74277.1 202 IEEGELLVVNTLYRFKNVPNESSSVMTvsssPRDTVLSLINKINPDLFILGVTNGTLDSPFFVTRFREALFQYSCLFDMLDATMKREDEDRLFLEGHLY 300
                 ********************998876555679******************************************************************* PP

        GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + e+ n+vaceg++r+er et+++W++r ++aG++++p+ e+  k + + +++ + + +++ e+ +++++gWk+r L+++S W+
  EPS74277.1 301 RMEALNIVACEGTQRVERPETYKQWHARTKRAGLRQLPFYEEDLKYIMSKVKEDYHRDFSLAEDGKWFLQGWKGRVLYAMSIWK 384
                 ****************************************************999899*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.361364IPR005202Transcription factor GRAS
PfamPF035144.0E-948384IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
EEQAVDLNAL LQRCAGAVAV RDTRAASDLL IRIRQHSSPR GGPAERVAHH FAVGLDARLA  60
GEGTELYAAS SANRIYAAEM LRAYKALIHA APFRRVSNML ANKTVWRAAV EARAKKLHVI  120
DFGILYGFQW PCLIHILSTM AGGPLKLRLT GIDFPQPGFR PAERVAQSGV RLAKYCRRFG  180
VPFEYNAIAR KWETITVEDL KIEEGELLVV NTLYRFKNVP NESSSVMTVS SSPRDTVLSL  240
INKINPDLFI LGVTNGTLDS PFFVTRFREA LFQYSCLFDM LDATMKREDE DRLFLEGHLY  300
RMEALNIVAC EGTQRVERPE TYKQWHARTK RAGLRQLPFY EEDLKYIMSK VKEDYHRDFS  360
LAEDGKWFLQ GWKGRVLYAM SIWKPAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-4173845375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089500.11e-178scarecrow-like protein 30
SwissprotQ9XE581e-147SCL14_ARATH; Scarecrow-like protein 14
TrEMBLS8ENB50.0S8ENB5_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.D02076.1.p1e-170(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-148SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]