PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS74277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | GRAS | ||||||||
Protein Properties | Length: 387aa MW: 44080.8 Da PI: 9.4788 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 315.5 | 1.1e-96 | 8 | 384 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lL +cA av+ +d+++a+ lL r+++++sp+g p +R+a++f+ +L arla++++ely+a ++++ +e l a+k++ ++ P+ ++s+++aN+ EPS74277.1 8 NALLQRCAGAVAVRDTRAASDLLIRIRQHSSPRGGPAERVAHHFAVGLDARLAGEGTELYAASSANRIY---AAEMLRAYKALIHAAPFRRVSNMLANK 103 56899*******************************************************766666665...9************************** PP GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 ++ +a+ ++ +++H+iDf+i +G+QWp+L++ L++ ++gp +lR+Tg++ p++g +e++ + g rLak+++++gvpfe+n+ +a+++e++++e+L+ EPS74277.1 104 TVWRAAVEAraKKLHVIDFGILYGFQWPCLIHILSTMAGGPLKLRLTGIDFPQPGfrPAERVAQSGVRLAKYCRRFGVPFEYNA-IARKWETITVEDLK 201 ***99877667999****************************************9*****************************.7************* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 +++gE l+Vn ++ +++++es s+ +rd+vL+l+++++P+++++ + ++s+ F++rf eal ys lfd+l+a++ re+e+r ++E +l EPS74277.1 202 IEEGELLVVNTLYRFKNVPNESSSVMTvsssPRDTVLSLINKINPDLFILGVTNGTLDSPFFVTRFREALFQYSCLFDMLDATMKREDEDRLFLEGHLY 300 ********************998876555679******************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + e+ n+vaceg++r+er et+++W++r ++aG++++p+ e+ k + + +++ + + +++ e+ +++++gWk+r L+++S W+ EPS74277.1 301 RMEALNIVACEGTQRVERPETYKQWHARTKRAGLRQLPFYEEDLKYIMSKVKEDYHRDFSLAEDGKWFLQGWKGRVLYAMSIWK 384 ****************************************************999899*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.36 | 1 | 364 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-94 | 8 | 384 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
EEQAVDLNAL LQRCAGAVAV RDTRAASDLL IRIRQHSSPR GGPAERVAHH FAVGLDARLA 60 GEGTELYAAS SANRIYAAEM LRAYKALIHA APFRRVSNML ANKTVWRAAV EARAKKLHVI 120 DFGILYGFQW PCLIHILSTM AGGPLKLRLT GIDFPQPGFR PAERVAQSGV RLAKYCRRFG 180 VPFEYNAIAR KWETITVEDL KIEEGELLVV NTLYRFKNVP NESSSVMTVS SSPRDTVLSL 240 INKINPDLFI LGVTNGTLDS PFFVTRFREA LFQYSCLFDM LDATMKREDE DRLFLEGHLY 300 RMEALNIVAC EGTQRVERPE TYKQWHARTK RAGLRQLPFY EEDLKYIMSK VKEDYHRDFS 360 LAEDGKWFLQ GWKGRVLYAM SIWKPAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-41 | 7 | 384 | 5 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089500.1 | 1e-178 | scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 1e-147 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | S8ENB5 | 0.0 | S8ENB5_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.D02076.1.p | 1e-170 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-148 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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