PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS74147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 66aa MW: 7574.56 Da PI: 6.5167 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4e-09 | 1 | 44 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+ E + + a + + ++ +W+ +ar +g gRt++++k ++ EPS74147.1 1 WTAKENKAFEIALAVFDKDtpeRWADVARAIG-GRTPEEVKRHYD 44 *****************99*************.**********95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-12 | 1 | 55 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-6 | 1 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.71E-6 | 1 | 43 | No hit | No description |
SMART | SM00717 | 0.0038 | 1 | 49 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 10.104 | 1 | 53 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-5 | 20 | 47 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 66 aa Download sequence Send to blast |
WTAKENKAFE IALAVFDKDT PERWADVARA IGGRTPEEVK RHYDDLVHDV RCIESGKVPF 60 PKYVTT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-32 | 1 | 66 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092800.1 | 4e-33 | transcription factor RADIALIS-like isoform X1 | ||||
Swissprot | Q58FS3 | 6e-32 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | S8EN20 | 3e-41 | S8EN20_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_002509490.1 | 3e-31 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-30 | RAD-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|