PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 199aa MW: 22271.6 Da PI: 8.6933 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 93.8 | 1.4e-29 | 34 | 86 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +v+Y+eC+kNhAa++GghavDGCgEfm+ + +a+kCaACgCHRnFHR+ + EPS73952.1 34 AVEYRECMKNHAAHIGGHAVDGCGEFMKP--VYAAGDAMKCAACGCHRNFHRQVM 86 689************************98..445689***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.2E-24 | 35 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.8E-24 | 36 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-15 | 37 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.413 | 37 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-29 | 124 | 197 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-18 | 125 | 194 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.2E-28 | 136 | 192 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
DSEIDTPPHA AQPVIIRPLS FSKILPPAPP SVPAVEYREC MKNHAAHIGG HAVDGCGEFM 60 KPVYAAGDAM KCAACGCHRN FHRQVMSPLI LYFADIDFQV TQPGILFPFR NGLTPSPPEE 120 RQQAPVTPMG NSLSGRKRFR TKFSQEQKDK MHSFSEKIGW KMQKCDDSEV RDFCSEIGVS 180 RGVFKVWMHN NKTLIAKKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-20 | 137 | 192 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022878317.1 | 2e-62 | zinc-finger homeodomain protein 10-like | ||||
TrEMBL | S8EMN5 | 1e-148 | S8EMN5_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009788342.1 | 5e-57 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 8e-47 | homeobox protein 34 |
Publications ? help Back to Top | |||
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