PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 211aa MW: 24344.1 Da PI: 8.497 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 56 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed++l+++v +G+ +W++Ia+++ gR++k+c++rw++ EPS73948.1 56 RGHWRPVEDLKLKELVSIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 101 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.4e-18 | 108 | 152 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++ eE+e+lv a++++G++ W+ Iar ++ gRt++ +k++w+ + EPS73948.1 108 RRAFSDEEEERLVAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHVV 152 6789******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.981 | 51 | 102 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-14 | 55 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 56 | 101 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.96E-27 | 56 | 149 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 57 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.60E-12 | 59 | 100 | No hit | No description |
PROSITE profile | PS51294 | 27.014 | 103 | 157 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-15 | 107 | 155 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 108 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.20E-11 | 110 | 153 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 110 | 156 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAFPNWGFSF LNNGEGKSSD SCGDSIDLNT TLYEEDEGCN AWSNKDGSGQ SKLCSRGHWR 60 PVEDLKLKEL VSIYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FSDEEEERLV 120 AAHRLYGNKW AMIARLFPGR TDNAVKNHWH VVMARKYREQ SSSHRRRKMG QIVCHQRAEE 180 NGISPEMEPS HGGRSWGPPH HYFLPGQNHD H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 56 | 157 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070989.1 | 6e-90 | transcriptional activator Myb | ||||
Swissprot | Q9SEZ4 | 6e-72 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | S8EDA5 | 1e-157 | S8EDA5_9LAMI; Uncharacterized protein | ||||
STRING | Solyc05g007870.1.1 | 7e-85 | (Solanum lycopersicum) | ||||
STRING | XP_009781411.1 | 2e-84 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-74 | myb domain protein 105 |
Publications ? help Back to Top | |||
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