PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73916.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C3H | ||||||||
Protein Properties | Length: 92aa MW: 10449.9 Da PI: 9.0412 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.5 | 1.4e-10 | 9 | 31 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f+rtGtC yG +C+++H++ EPS73916.1 9 DCSYFLRTGTCAYGRNCRYNHPR 31 6********************96 PP | |||||||
2 | zf-CCCH | 31.4 | 3.3e-10 | 54 | 76 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C +++rtG+CkyG+ Ck++H++ EPS73916.1 54 DCAYYLRTGFCKYGGGCKYNHPK 76 6********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.6E-4 | 4 | 31 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.563 | 4 | 32 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-7 | 9 | 32 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-8 | 9 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 10 | 31 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-4 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.544 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.02E-6 | 54 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-8 | 54 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 55 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
FPERPGALDC SYFLRTGTCA YGRNCRYNHP RSRNHVSVLR EAADELPERP GAIDCAYYLR 60 TGFCKYGGGC KYNHPKNRHV DVPMNALGLP MR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085488.1 | 2e-30 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
Refseq | XP_011085489.1 | 2e-30 | zinc finger CCCH domain-containing protein 33 isoform X2 | ||||
Swissprot | Q84W91 | 4e-27 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | S8D945 | 9e-62 | S8D945_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.H01247.1.p | 5e-29 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21294 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 1e-29 | C3H family protein |
Publications ? help Back to Top | |||
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