PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73915.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 114aa    MW: 12828.6 Da    PI: 9.1335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73915.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.5e-073411255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                R +++ +++  L++l+ +      +K + a++L +A+eYIk+L+
  EPS73915.1  3 RKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKYLH 41
                6789999*********998.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.728140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-11158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-13259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0032246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-7344No hitNo description
PfamPF000108.0E-5340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
QVRKEKMGDR ITALQQLVSP FGKTDTASVL SEAIEYIKYL HEQVNVLSSP YMKVASPTQQ  60
HMHQKQVRAT TRSNEETDLR SRGLCLVPVS STFPMANESG VVDFWTPTFG SNLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553877.15e-49transcription factor bHLH123
RefseqXP_020554489.15e-49transcription factor bHLH123-like, partial
SwissprotQ8GXT35e-45BH123_ARATH; Transcription factor bHLH123
TrEMBLS8D3H32e-80S8D3H3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M01838.1.p5e-48(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]