PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | SBP | ||||||||
Protein Properties | Length: 208aa MW: 22936.9 Da PI: 9.3606 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.8 | 2e-40 | 25 | 100 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C v+gCeadls +eyhrrhkvCe hskap+v+++g+eqrfCqqCsrfh+l efD +krsCr+rL++hn+rrrk++ EPS73793.1 25 CVVDGCEADLSLFREYHRRHKVCEPHSKAPTVTIHGKEQRFCQQCSRFHSLAEFDSGKRSCRKRLDGHNRRRRKPH 100 **************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-32 | 22 | 86 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.453 | 22 | 99 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.19E-38 | 24 | 103 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-32 | 25 | 98 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MESPESKKGQ NPLLPPPRKQ IAAQCVVDGC EADLSLFREY HRRHKVCEPH SKAPTVTIHG 60 KEQRFCQQCS RFHSLAEFDS GKRSCRKRLD GHNRRRRKPH ASGLYMSGRH HGCFPTTTYL 120 SFANPRPTVP PSSADSSAYC YSTSVAPPAV ACDRAFSFLS SPNASLHDVE SNDGAGAGFF 180 GSFQSYDGPP GPARALLLLL QLNHRITI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 25 | 98 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 98 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021723074.1 | 4e-43 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_021723075.1 | 4e-43 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_021723076.1 | 4e-43 | squamosa promoter-binding-like protein 13A | ||||
Swissprot | Q0J0K1 | 7e-40 | SPL18_ORYSJ; Squamosa promoter-binding-like protein 18 | ||||
TrEMBL | S8ECW3 | 1e-151 | S8ECW3_9LAMI; Uncharacterized protein | ||||
STRING | XP_006484146.1 | 7e-42 | (Citrus sinensis) | ||||
STRING | XP_006437993.1 | 7e-42 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4920 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-41 | SBP family protein |
Publications ? help Back to Top | |||
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