PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73791.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 498aa    MW: 53674.4 Da    PI: 8.2336
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73791.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07220240526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f + G C  Gd+C FaHg
  EPS73791.1 220 PCPEFKK-GNCGKGDNCEFAHG 240
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.31E-1434118IPR020683Ankyrin repeat-containing domain
PfamPF127962.3E-1039110IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.1E-1543121IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.3244368IPR002110Ankyrin repeat
SMARTSM002486.7E-44373IPR002110Ankyrin repeat
PROSITE profilePS5029715.51243113IPR020683Ankyrin repeat-containing domain
CDDcd002043.47E-1445115No hitNo description
PROSITE profilePS5008811.1478113IPR002110Ankyrin repeat
SMARTSM002484.6E-478110IPR002110Ankyrin repeat
PROSITE profilePS5010313.056215242IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5215241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5215241IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4220240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4247279IPR000571Zinc finger, CCCH-type
SMARTSM0035622250273IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.427250274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
LLELAAVDDL AGFRREVREM GRDLNEVGLW YGRNFGSNKM GFEERTPLMM AAMYGSTSVL  60
KYIVDSGAVD VNGACGSDGV TALHCAAAGG SRASSEIVRI LIDADADVNA VAVNGKKAGD  120
LIPPPPCAKS CNSFERKSLE VLLNGRATKY GNEKREYSIE IPMPDINDGI YGSDEFRMYS  180
FKVRPCSRAY SHDWTECPFV HPGENARRRD LRKYNYTCVP CPEFKKGNCG KGDNCEFAHG  240
VFESWLHPAQ YRTRLCKDET GCGRKVCFFA HRPEELRPVY AATGSALASP KSVELSGLGL  300
SPLSIGSPTV MGSSSSSSSP IVGGGLWPPT KAVVPTPPSL QLPGSRLKAA VSARDVDDVF  360
ASYDSQLLSQ LQSLQSPTAG IHLRQNMNPL RASYPSNVSP SPSRMYGGFD TSAAVAAAVL  420
NSRSSSGFAK RSQSFVDRGR PGNSPGPMAS KLAEWSSPDG RLNWEFNGDD VNKLRKSASF  480
GIRNGISPPE PDVSWVNS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084902.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE61e-164C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLS8D8M40.0S8D8M4_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009345008.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-147C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]