PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | SBP | ||||||||
Protein Properties | Length: 125aa MW: 13806.9 Da PI: 10.0248 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 118.5 | 3.4e-37 | 18 | 92 | 2 | 76 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 CqvegC a l+++k ++ rhkvC +hsk+p+v+++g+e rfCqqCsrfhel efD+e rsC rrLa+hn+rrrk EPS73767.1 18 CQVEGCGAVLTDTKPFYWRHKVCPQHSKSPKVIIAGVEMRFCQQCSRFHELAEFDKENRSCCRRLAGHNQRRRKV 92 *************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-31 | 11 | 78 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 28.462 | 15 | 92 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.8E-35 | 16 | 95 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.7E-31 | 18 | 91 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
PSTSKSKNTS GGRVPPKCQV EGCGAVLTDT KPFYWRHKVC PQHSKSPKVI IAGVEMRFCQ 60 QCSRFHELAE FDKENRSCCR RLAGHNQRRR KVPPGGAMVP PMFGNLLGGS GSFMMDFGAY 120 ATSQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-27 | 6 | 91 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021865278.1 | 4e-42 | squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q700W2 | 2e-34 | SPL9_ARATH; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | S8EM62 | 8e-89 | S8EM62_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | EOY09456 | 1e-40 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 1e-36 | squamosa promoter binding protein-like 9 |