PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73634.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 140aa MW: 16227.5 Da PI: 10.1018 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 7.6e-19 | 12 | 64 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++++ql++Le+ F+ +++ e++ LAk lgL+ rq+ vWFqNrRa++k+ EPS73634.1 12 RGLSSDQLRTLERNFQLGKKLEPERKMYLAKILGLPPRQIAVWFQNRRARWKN 64 46799**********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 123.1 | 1.3e-39 | 9 | 99 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkr ls++q+++LE++F+ +kLeperK+ la+ Lgl prq+avWFqnrRAR+k+kqlEkdy+ Lk++y+ + +en++L++++++L++++ EPS73634.1 9 EKKRGLSSDQLRTLERNFQLGKKLEPERKMYLAKILGLPPRQIAVWFQNRRARWKNKQLEKDYDLLKAQYEGIIAENDALHTQNQKLQAKI 99 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.941 | 5 | 65 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-20 | 8 | 69 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-20 | 9 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.25E-15 | 10 | 66 | No hit | No description |
Pfam | PF00046 | 2.9E-16 | 12 | 64 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-21 | 14 | 72 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 40 | 63 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 3.6E-12 | 65 | 104 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
EDEFSDDGEK KRGLSSDQLR TLERNFQLGK KLEPERKMYL AKILGLPPRQ IAVWFQNRRA 60 RWKNKQLEKD YDLLKAQYEG IIAENDALHT QNQKLQAKIL AMKRREKTES SINLNNKASC 120 SSNMRREEVV EGGLSLAPPV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 65 | RRARWKNKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017626534.1 | 2e-52 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 2e-49 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | S8D1H6 | 7e-98 | S8D1H6_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.005G139600.1 | 1e-51 | (Gossypium raimondii) | ||||
STRING | Gorai.013G083600.1 | 1e-51 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-51 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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