PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS73619.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25452 Da PI: 5.9675 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.8 | 5.2e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g++KKAeEL vLCda+va+i+fss+gkl+ey+s EPS73619.1 10 KIDNVTARQVTFSKRRRGLFKKAEELAVLCDADVALIVFSSSGKLFEYAS 59 69**********************************************86 PP | |||||||
2 | K-box | 51.6 | 4e-18 | 93 | 171 | 20 | 98 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ L ke+ + +++R++ Ge+L++Ls++eLqqLe+ +e++l+++ +kK e ++e+i++lq+k k+l een +L+k++ EPS73619.1 93 NYSMLSKEVAERTNQLRRMRGEELNELSIQELQQLEKSIESGLSRVMEKKGERIMEEIKRLQEKGKQLMEENVRLKKRV 171 5777888888888999***********************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.011 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.80E-38 | 2 | 69 | No hit | No description |
PRINTS | PR00404 | 8.1E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-30 | 3 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.951 | 87 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.3E-16 | 92 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MAREKIQIRK IDNVTARQVT FSKRRRGLFK KAEELAVLCD ADVALIVFSS SGKLFEYASS 60 SMKEILERHD LHAKNLDKMD QPSLELQLVE DSNYSMLSKE VAERTNQLRR MRGEELNELS 120 IQELQQLEKS IESGLSRVME KKGERIMEEI KRLQEKGKQL MEENVRLKKR VVDMGRRSMM 180 MNDATMADSL NLAYDEGQSS ESVNASSGPP QDCESSDTSL KLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 2e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 2e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 2e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 2e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 2e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 2e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 2e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097479.1 | 1e-120 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FUY6 | 2e-97 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | S8D1G3 | 1e-159 | S8D1G3_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_015543m | 1e-109 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-99 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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