PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73261.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GATA
Protein Properties Length: 167aa    MW: 18567.8 Da    PI: 9.3531
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73261.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA66.33.2e-215488135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+nCgtt+TplWR+gp+g+k+LCnaCG++y+k+++
  EPS73261.1 54 CANCGTTSTPLWRNGPRGPKSLCNACGIRYKKEER 88
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.6E-2148100IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-1551102No hitNo description
PROSITE profilePS5011414.2855284IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-185288IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.39E-155385No hitNo description
PROSITE patternPS0034405479IPR000679Zinc finger, GATA-type
PfamPF003207.5E-195488IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MASNGGQQAF DGFTVDCTLS LGTPSTRRAE NALPQSTAKG HRAGAGDCFF VRRCANCGTT  60
STPLWRNGPR GPKSLCNACG IRYKKEERRA TAAAIDKQDH YMMMSSPWGR QIKHLGSGNR  120
VPYLSWRFSF NLDKLGHEDQ ENAETDSDEN PLAGLRHRDK PLYSRFL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022880472.12e-31GATA transcription factor 18-like
SwissprotQ6QPM22e-25GAT19_ARATH; GATA transcription factor 19
TrEMBLS8D7281e-123S8D728_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.18e-28GATA transcription factor 19
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]