PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS73028.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 196aa    MW: 21168.2 Da    PI: 8.6216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS73028.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.18.5e-152874354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  EPS73028.1 28 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 74
                79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.9072574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-122874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.27E-52877No hitNo description
SuperFamilySSF474592.75E-152983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-152984IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.4E-6111158No hitNo description
CDDcd048733.57E-8111159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
AAPFGLHAEL QKMSAQEIMD AKALAASKSH SEAERRRRER INNHLAKLRS LLPSTTKTDK  60
ASLLAEVIQH VKELKRQTSQ IAETSPVPTE SDELSVESAK PNGQKPVIRA SICCEDRPDL  120
IPDLIAALKS LKLRTLKAEI ATLGGRVRNV LFVTGSDDDS GAGGGECCVG SIREALRVVM  180
EKCCVGDESG SAKRQR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028789300.15e-93transcription factor bHLH30-like
RefseqXP_028789302.15e-93transcription factor bHLH30-like
SwissprotQ9S7Y14e-81BH030_ARATH; Transcription factor bHLH30
TrEMBLS8EAV81e-138S8EAV8_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_004297146.12e-88(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]