PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS72941.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 118aa MW: 14114.2 Da PI: 11.2078 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.7e-17 | 5 | 50 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+ +G+ +W++Ia++++ gR++k+c++rw++ EPS72941.1 5 RGHWKPSEDAKLRELVAVFGPQNWNLIAEKLQ-GRSGKSCRLRWYNQ 50 899*****************************.************96 PP | |||||||
2 | Myb_DNA-binding | 57.2 | 3.7e-18 | 57 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++++eE+ +lv+a++ +G++ W++I+r ++ gRt++ +k++w+ + EPS72941.1 57 RTAFSEEEEVRLVEAHRAYGNK-WALISRLFP-GRTDNAVKNHWHVL 101 678*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.644 | 1 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-14 | 4 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.86E-29 | 5 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.7E-17 | 5 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-27 | 6 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-11 | 8 | 49 | No hit | No description |
SMART | SM00717 | 6.0E-15 | 56 | 104 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.58 | 56 | 106 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.1E-15 | 57 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 59 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.75E-9 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
KYCTRGHWKP SEDAKLRELV AVFGPQNWNL IAEKLQGRSG KSCRLRWYNQ LDPRINRTAF 60 SEEEEVRLVE AHRAYGNKWA LISRLFPGRT DNAVKNHWHV LMARRIREKS KPNYVRRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-34 | 4 | 106 | 6 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605698.1 | 5e-67 | transcription factor MYB105-like | ||||
Swissprot | Q5NBM8 | 4e-65 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | S8D6B4 | 4e-82 | S8D6B4_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006482676.1 | 1e-65 | (Citrus sinensis) | ||||
STRING | cassava4.1_028014m | 4e-66 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-66 | myb domain protein 105 |