PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS72936.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HD-ZIP

Protein Properties

Length: 473aa MW: 53621.2 Da PI: 7.112

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72936.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.5	7.2e-21	73	128	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++ +e+lF+++++p++++r eL+k+lgL rqVk+WFqNrR++ k EPS72936.1 73 RKKHHRHTPDQIRKMEALFKESPHPDEKQRVELSKQLGLHPRQVKFWFQNRRTQIK 128 789999**********************************************9877 PP
2	HD-ZIP_I/II	63	7.4e-21	75	157	2	84
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 k++r + +q++ +E F+e+ + + +++vel+++Lgl+prqv+ WFqnrR +k+ q ++ + Lk+++d+l++en++L + v EPS72936.1 75 KHHRHTPDQIRKMEALFKESPHPDEKQRVELSKQLGLHPRQVKFWFQNRRTQIKAIQERHENSLLKNEIDRLRHENKALWETV 157 77899************************************************************************997765 PP
3	START	164.7	6.8e-52	233	457	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 + ++a++el ++a+ +ep+Wv+s+ e++n+d+++++f++ ++ +s+ea+r+s+ + l+ lv++++d++ +W+e ++ kae ++ EPS72936.1 233 VVNQATEELRRMATHGEPLWVRSYetgrEILNYDVYVKEFPPHEAlsdsseqkKSIEASRDSRTIFVHLPWLVQSFMDVN-RWKELFPclisKAEAIDD 330 5678999*********************************999*******************************.************** PP ECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE.EEEE-EE--SSXX CS START 85 issg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv.twvehvdlkgrlp 177 is g + + ae q+l+p+vp R+ f+R++++l+a dw+i+d+Svd +++ + + +++++pSg++ie+ksngh+kv twveh +++++++ EPS72936.1 331 ISIGegdnKDGAIIHAEIQMLTPMVPaREMQFIRHCKKLSATDWAILDISVDKIEEKM-DLISNKCRKRPSGCIIEDKSNGHCKVvTWVEHLECRKSTV 428 999966666779999999******************************99.8999*****************648******** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqcek 206 h+ +r++v+sgla+ ak+w +tlq+qce+ EPS72936.1 429 HSSYRPIVNSGLAFSAKRWISTLQQQCER 457 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-22	60	124	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.34E-20	61	131	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.831	70	130	IPR001356	Homeobox domain
SMART	SM00389	6.7E-19	72	134	IPR001356	Homeobox domain
Pfam	PF00046	3.2E-18	73	128	IPR001356	Homeobox domain
CDD	cd00086	9.12E-16	80	128	No hit	No description
PRINTS	PR00031	7.4E-5	101	110	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	105	128	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.4E-5	110	126	IPR000047	Helix-turn-helix motif
PROSITE profile	PS50848	34.674	223	460	IPR002913	START domain
SuperFamily	SSF55961	3.16E-26	224	457	No hit	No description
CDD	cd08875	1.77E-88	227	456	No hit	No description
SMART	SM00234	3.5E-46	232	457	IPR002913	START domain
Pfam	PF01852	1.4E-40	233	457	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
FLAASALSLS LAGIFHDGGG RGEMAAEGSS ENSAPLKSRS EEDYELGDGE QNNGDEDDED 60 DDGIDGEKKN KKRKKHHRHT PDQIRKMEAL FKESPHPDEK QRVELSKQLG LHPRQVKFWF 120 QNRRTQIKAI QERHENSLLK NEIDRLRHEN KALWETVNTS SCPSCGYSSS TGGPTNGAGG 180 DEQRLRIENS KLKAEVEKLR SVNRKHSNAT SSNNTSFSGT SRLEMEKPRL MEVVNQATEE 240 LRRMATHGEP LWVRSYETGR EILNYDVYVK EFPPHEALSD SSEQKKSIEA SRDSRTIFVH 300 LPWLVQSFMD VNRWKELFPC LISKAEAIDD ISIGEGDNKD GAIIHAEIQM LTPMVPAREM 360 QFIRHCKKLS ATDWAILDIS VDKIEEKMDL ISNKCRKRPS GCIIEDKSNG HCKVVTWVEH 420 LECRKSTVHS SYRPIVNSGL AFSAKRWIST LQQQCERLVF LVATNVPTKN SNG

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

FLAASALSLS LAGIFHDGGG RGEMAAEGSS ENSAPLKSRS EEDYELGDGE QNNGDEDDED  60
DDGIDGEKKN KKRKKHHRHT PDQIRKMEAL FKESPHPDEK QRVELSKQLG LHPRQVKFWF  120
QNRRTQIKAI QERHENSLLK NEIDRLRHEN KALWETVNTS SCPSCGYSSS TGGPTNGAGG  180
DEQRLRIENS KLKAEVEKLR SVNRKHSNAT SSNNTSFSGT SRLEMEKPRL MEVVNQATEE  240
LRRMATHGEP LWVRSYETGR EILNYDVYVK EFPPHEALSD SSEQKKSIEA SRDSRTIFVH  300
LPWLVQSFMD VNRWKELFPC LISKAEAIDD ISIGEGDNKD GAIIHAEIQM LTPMVPAREM  360
QFIRHCKKLS ATDWAILDIS VDKIEEKMDL ISNKCRKRPS GCIIEDKSNG HCKVVTWVEH  420
LECRKSTVHS SYRPIVNSGL AFSAKRWIST LQQQCERLVF LVATNVPTKN SNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	74	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027168169.1	0.0	homeobox-leucine zipper protein GLABRA 2
Swissprot	P46607	1e-158	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	S8D6B2	0.0	S8D6B2_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_007150635.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6228	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	1e-140	HD-ZIP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]