PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72847.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NF-YC
Protein Properties Length: 147aa    MW: 16167.5 Da    PI: 10.2823
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72847.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC621.2e-199881897
       NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
                ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t+    ++++v++ ++fdfl ++v 
  EPS72847.1  9 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYGVTVQRGAKTVSSLHLKQCVQSYNVFDFLKEVVS 88
                5789************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-26675IPR009072Histone-fold
SuperFamilySSF471131.46E-20791IPR009072Histone-fold
PfamPF008081.5E-191174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
ACIMRKKLDT RFPAARIKKI MQADEDVGKI AMAVPVLVSK ALELFLQDLC DRTYGVTVQR  60
GAKTVSSLHL KQCVQSYNVF DFLKEVVSNV PEFGISEGAS DSSKRRKVLP NESHDSDQES  120
KRGISQETCH SSGVGRGRGR GRGRGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-24575575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135145RGRGRGRGRGR
2137146RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553014.16e-74dr1-associated corepressor-like isoform X2
SwissprotA0JPP13e-30NC2A_RAT; Dr1-associated corepressor
SwissprotQ149193e-30NC2A_HUMAN; Dr1-associated corepressor
SwissprotQ2YDP33e-30NC2A_BOVIN; Dr1-associated corepressor
TrEMBLS8EJV81e-103S8EJV8_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.N01867.1.p6e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79602230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-62nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]