PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS72831.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 797aa MW: 91650 Da PI: 8.1597

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72831.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.1	1.3e-27	51	138	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g++ e +++ ++r+ +++t+Cka+++vk+++dgkw+++++ +eHnHel p EPS72831.1 51 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGTTPEYENS---SSRRPGVKKTDCKASMHVKRKRDGKWYIHEFIKEHNHELLP 138 5*************************************9998777...7788889*****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-25	51	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-20	259	350	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	538	574	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.4E-7	548	573	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-8	549	576	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence Send to blast
DGIALNLCDT VKNWDCPMSI CSKGDASGTE DNRSEADDGS IEFESHEVAY SFYQEYAKSM 60 GFTTSIKNSR RSKKTKEFID AKFACSRYGT TPEYENSSSR RPGVKKTDCK ASMHVKRKRD 120 GKWYIHEFIK EHNHELLPAL AYHFHIHRNV KLAEKNNIDI LHAVSERTRK MYVEMCRQSG 180 GIYHPFVCKN KFDSRIEGSR CVALDEGDAR IVMDHFMQLK KENPHFFYAV ELNEEQRVRN 240 LFWIDARNRR DYVSFNDAVF FDTAYIKSNE KIPISLFLGV NHHFQPMLLG CGLLADETKS 300 TFVWLLKTWL GAVGGKSPNV IISGQDKQLT SAIEEIFPSS RHCFPLWHVL ERMPETLGNV 360 LRQHSNFMKK FNKCIFKSLP DEEFDMRWWK MVTRFELQEN EWVQSLYVDR KKWVPAFMSN 420 VFLAGLSPHH RSESLNSVFD KYVHKKLNLK EFLRQYSTML RNRYEEEELA DFDTCHKQAA 480 LKSPSPWEKQ MSTIYTHAIF RKFQVEVLGV VGCHSKKEEE DGVTAAFKVD DYEKGENFAV 540 TYNKAKLEVS CSCLMFEYKG FLCRHSMSVL QRCGLSSIPS SYILKRWTKD AKAKQGAAAT 600 VEETDRVQGR VQRYNDLCRL AIRLGEEGSF CDKNYNIACR ALVEALKNCV EVNNKTAAVD 660 SSNYSSGLRF SEQESLLLHG TSKTNKKNTN KKRKSQQEPP EAVLLEAQDN LEPMGNLSSQ 720 DMTLTGYYAS QQNVQGLLNL MEPPQDVYYV GQQTMPGMLN SIPSRHHDSF YGGAAHHQCL 780 PPGGHLEFRQ TAFPYGP

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence Send to blast

DGIALNLCDT VKNWDCPMSI CSKGDASGTE DNRSEADDGS IEFESHEVAY SFYQEYAKSM  60
GFTTSIKNSR RSKKTKEFID AKFACSRYGT TPEYENSSSR RPGVKKTDCK ASMHVKRKRD  120
GKWYIHEFIK EHNHELLPAL AYHFHIHRNV KLAEKNNIDI LHAVSERTRK MYVEMCRQSG  180
GIYHPFVCKN KFDSRIEGSR CVALDEGDAR IVMDHFMQLK KENPHFFYAV ELNEEQRVRN  240
LFWIDARNRR DYVSFNDAVF FDTAYIKSNE KIPISLFLGV NHHFQPMLLG CGLLADETKS  300
TFVWLLKTWL GAVGGKSPNV IISGQDKQLT SAIEEIFPSS RHCFPLWHVL ERMPETLGNV  360
LRQHSNFMKK FNKCIFKSLP DEEFDMRWWK MVTRFELQEN EWVQSLYVDR KKWVPAFMSN  420
VFLAGLSPHH RSESLNSVFD KYVHKKLNLK EFLRQYSTML RNRYEEEELA DFDTCHKQAA  480
LKSPSPWEKQ MSTIYTHAIF RKFQVEVLGV VGCHSKKEEE DGVTAAFKVD DYEKGENFAV  540
TYNKAKLEVS CSCLMFEYKG FLCRHSMSVL QRCGLSSIPS SYILKRWTKD AKAKQGAAAT  600
VEETDRVQGR VQRYNDLCRL AIRLGEEGSF CDKNYNIACR ALVEALKNCV EVNNKTAAVD  660
SSNYSSGLRF SEQESLLLHG TSKTNKKNTN KKRKSQQEPP EAVLLEAQDN LEPMGNLSSQ  720
DMTLTGYYAS QQNVQGLLNL MEPPQDVYYV GQQTMPGMLN SIPSRHHDSF YGGAAHHQCL  780
PPGGHLEFRQ TAFPYGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	249	RNLFWIDARNRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085456.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_011085457.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	S8D629	0.0	S8D629_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.H01263.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]