PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS72555.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 204aa MW: 21859.6 Da PI: 6.0126

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72555.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.4	3.4e-05	111	146	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r++++++ L++l+ + +K + a++Le+A YIk Lq EPS72555.1 111 RLREKISVLQQLVSPF-----GKTDTASVLEEALGYIKFLQ 146 78999******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.874	96	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0089	107	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-10	109	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-7	110	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.27E-6	110	150	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MGRNLGFSWV GPLDCDATTL SKLPPPPPAS SFKIMGGGLG DDDPISSTGS YSELLFCDEI 60 PGLDPDPEAE TTSSRGSSGN CIGSGSGTGR RKSKIRRSSA PTGHATGKKE RLREKISVLQ 120 QLVSPFGKTD TASVLEEALG YIKFLQEQVK VLFSPYIRTL PREEEVRMTD LRSRGLCLCP 180 ADLVRRELTE SNGADLYSST SAAT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002269988.1	7e-34	PREDICTED: transcription factor bHLH113 isoform X3
Swissprot	Q7XJU1	4e-29	BH154_ARATH; Transcription factor bHLH154
TrEMBL	S8CZQ2	1e-145	S8CZQ2_9LAMI; Uncharacterized protein
STRING	VIT_03s0091g00210.t01	3e-33	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31730.1	1e-30	bHLH family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]