PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS72496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | DBB | ||||||||
Protein Properties | Length: 120aa MW: 13194.2 Da PI: 5.6053 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.7 | 4.9e-08 | 10 | 40 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 + C+ +e+ ++lfC ++ lC++C ++ H EPS72496.1 10 TLCDVCESAAAILFCAADEAALCRSCDDKVH 40 57*************************9998 PP | |||||||
2 | zf-B_box | 27.2 | 7.9e-09 | 60 | 98 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++C+ +e+ ++ ++Ce +++ lC +C + H g H EPS72496.1 60 VPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 98 689**************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.7E-9 | 7 | 54 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.798 | 7 | 54 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-6 | 10 | 49 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.04E-5 | 10 | 52 | No hit | No description |
SMART | SM00336 | 9.1E-11 | 58 | 103 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.717 | 58 | 103 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-6 | 60 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.94E-6 | 61 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
EEVKLGIMRT LCDVCESAAA ILFCAADEAA LCRSCDDKVH MCNKLASRHV RVGLAEPNAV 60 PRCDICENAP AFFYCEIDGS SLCLQCDMIV HVGGKRTHGR YLMLRQRAEF PGDRSGIAEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088488.1 | 1e-72 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551620.1 | 1e-72 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551621.1 | 1e-72 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551622.1 | 1e-72 | B-box zinc finger protein 19 | ||||
Swissprot | C0SVM5 | 1e-65 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | S8D529 | 2e-82 | S8D529_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0009s12730.1 | 3e-71 | (Populus trichocarpa) | ||||
STRING | cassava4.1_016111m | 5e-71 | (Manihot esculenta) | ||||
STRING | XP_010271471.1 | 5e-71 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 4e-68 | DBB family protein |
Publications ? help Back to Top | |||
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