PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS72462.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | Dof | ||||||||
Protein Properties | Length: 181aa MW: 19485.7 Da PI: 8.3109 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.5 | 5.9e-38 | 6 | 63 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++P+Ggg+rk k EPS72462.1 6 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPIGGGSRKGAK 63 57899*************************************************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-24 | 2 | 58 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.3E-33 | 8 | 62 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.882 | 9 | 63 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 11 | 47 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
AMPSEPEHLP CPRCDSTNTK FCYYNNYNFS QPRHFCKSCR RYWTHGGTLR DIPIGGGSRK 60 GAKRPRPAAA VDVGASFPCH DSRRGDLSAP SQGLIPMNGS FTSLLNNHHH HHHHQNVGGI 120 LGFGFEEVGF GRSGWPFYGP VSDPIAAAQP WHRLQNGDGG GGGGGFMGGG DCIATFPDLA 180 I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 66 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00593 | DAP | Transfer from AT5G66940 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099306.1 | 3e-51 | dof zinc finger protein DOF3.4 | ||||
Swissprot | Q9FGD6 | 7e-36 | DOF58_ARATH; Dof zinc finger protein DOF5.8 | ||||
TrEMBL | S8EIR7 | 1e-130 | S8EIR7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.H00486.1.p | 9e-46 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4532 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 7e-33 | OBF binding protein 1 |
Publications ? help Back to Top | |||
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