PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72360.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 843aa    MW: 91930.2 Da    PI: 6.0389
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72360.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.7e-21123178156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  EPS72360.1 123 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 178
                 688999***********************************************999 PP
2START208.91.9e-653255471206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela++a++elvk+++ ++p+W +s     e++n++e++++f++  +     + +ea+r+sgvv+ ++  lve+l+d++ +W e ++    + +t++vis
  EPS72360.1 325 ELALAAMDELVKMVETDDPLWIRSLengrEILNEEEYMRNFTPCIGmkpdgFITEASRESGVVIINSLALVETLMDSN-KWAEIFPcivaRTTTTDVIS 422
                 5899**************************************99989*******************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                  g      g l+lm ae+q+lsplvp Rd+ f+R+++ql +g w++vdvSvd  ++ p  +++ R+++lpSg+++++++ng+skvtwveh++++++l+h
  EPS72360.1 423 GGmggtrsGSLHLMHAEFQVLSPLVPvRDVHFLRFCKQLAEGAWAVVDVSVDAVRETP--AGYSRCRRLPSGCVVQDTPNGYSKVTWVEHTEYDDSLVH 519
                 ********************************************************99..6************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +l+r+l++sg  +ga +wvatlqrqce+
  EPS72360.1 520 QLYRPLINSGFGFGAPRWVATLQRQCEC 547
                 **************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-20105180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-21111180IPR009057Homeodomain-like
PROSITE profilePS5007117.216120180IPR001356Homeobox domain
SMARTSM003899.9E-18121184IPR001356Homeobox domain
CDDcd000861.39E-18122180No hitNo description
PfamPF000461.4E-18123178IPR001356Homeobox domain
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
PROSITE profilePS5084847.073316550IPR002913START domain
SuperFamilySSF559613.85E-37316547No hitNo description
CDDcd088752.93E-111320546No hitNo description
SMARTSM002345.0E-56325547IPR002913START domain
PfamPF018521.0E-57325547IPR002913START domain
Gene3DG3DSA:3.30.530.205.5E-5430541IPR023393START-like domain
SuperFamilySSF559614.4E-24574790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MSFGDNYNIS GGGSARIAPD LDLSYANGAA MPTTGAAIPH PHLLPHSINK PIFNSSATGL  60
SLALQSQSGM ERQGDVGRIG ENYDGNNVGV RNREEENESR SMSDNFDGGS GDDQDAADKP  120
PRKKRYHRHT PQQIQELEAL FKECPHPDEK QRLELSKRLC LETRQVKFWF QNRRTQMKTQ  180
LERHENSLLR QENDKLRSEN LSMRDAMRNP ICTNCGGPAI MGEISLEEQH LRIDNARLKD  240
ELERVCVLAG KFLGRPASSF PVPSMPNSSL ELGVGNNGFG GLNPSMLPLG FPDFVVGGGG  300
GGLPVMPASK TTMNSAPIER SLYLELALAA MDELVKMVET DDPLWIRSLE NGREILNEEE  360
YMRNFTPCIG MKPDGFITEA SRESGVVIIN SLALVETLMD SNKWAEIFPC IVARTTTTDV  420
ISGGMGGTRS GSLHLMHAEF QVLSPLVPVR DVHFLRFCKQ LAEGAWAVVD VSVDAVRETP  480
AGYSRCRRLP SGCVVQDTPN GYSKVTWVEH TEYDDSLVHQ LYRPLINSGF GFGAPRWVAT  540
LQRQCECLAI LMSSSSPAKD HTAISTGGMK SMLKLAQRMT NNFCAGVCAS TVHKWNKLRT  600
ENVDDDVRVM TRKSVDDPGE PQGIVLSAAT SVWLPVTAQR LFDFLRNEHL RSEWDILSNG  660
GPMQEMAHIA KGQDHGNCVS LLRASAMNAN QSNMLILQET CVDAAGSLVV YAPVDIPAMH  720
VVMNGGDSAY VALLPSGFAI VPDGRGGVED GSLLTVAFQI LVNSLPTAKL TVESVETVNN  780
LISCTVQKIK AALRCDEETS SVSSGESRTN LRRKEILATW SELGRGLRPR CKGGGSGIDS  840
GAS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093166.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLS8CZA10.0S8CZA1_9LAMI; Uncharacterized protein
STRINGcassava4.1_001764m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]