PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS72350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28423.7 Da PI: 4.947 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 6e-16 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ +ar g++R++k+c++rw +yl EPS72350.1 39 KGLWSPEEDEKLMNYMSTNGQGCWSDVARNAGLRRCGKSCRLRWINYL 86 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 8.2e-17 | 92 | 136 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+el+++++ +lG++ W+ Ia +++ gRt++++k++w++ EPS72350.1 92 RGAFSSEEEELILHLHSLLGNR-WSQIATRLP-GRTDNEIKNFWNST 136 89********************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.943 | 34 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-29 | 37 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-12 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.65E-9 | 42 | 86 | No hit | No description |
PROSITE profile | PS51294 | 25.882 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-10 | 94 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MERDILSEST STMAKASSDP PSRKKRAPAS DGNNVKLRKG LWSPEEDEKL MNYMSTNGQG 60 CWSDVARNAG LRRCGKSCRL RWINYLRPDL KRGAFSSEEE ELILHLHSLL GNRWSQIATR 120 LPGRTDNEIK NFWNSTMKKK RLKNSSANSS NGNYVSPEFR ADLAGDETMM IVNMNMFVEP 180 SSSSPPPLQQ LPMTFPDDVD DPFGRNPSFD LDAKVERDDG EDFGGFWGVS ELYEEVMKDF 240 PTTSFLGFQD E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 34 | 140 | 22 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 143 | MKKKRLKN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00336 | DAP | Transfer from AT3G08500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022759455.1 | 8e-71 | transcription factor MYB83-like | ||||
TrEMBL | S8CZ96 | 0.0 | S8CZ96_9LAMI; Uncharacterized protein | ||||
STRING | Aquca_014_00829.1 | 2e-69 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 1e-55 | myb domain protein 83 |
Publications ? help Back to Top | |||
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