PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS72090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 728aa MW: 79545.9 Da PI: 5.6579 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.9 | 9.9e-20 | 62 | 117 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k EPS72090.1 62 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 117 688999***********************************************998 PP | |||||||
2 | START | 218.8 | 1.8e-68 | 250 | 470 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ela +a++el+++a ++ep+W + e + ++++++ f+++ + ++ea+r+s+vv+m++++lve+l+d++ qW+ + +a+tlev+s EPS72090.1 250 ELAVAAMEELIRMAHSGEPLWISNTenscETLSEEDYVRVFPRGIGprplgLKSEASRESAVVIMNHVNLVEILMDVN-QWSSVFSsivsRAMTLEVLS 347 57899******************99899999999999999999999********************************.******************** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 +g galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ + + R++++pSg+li++++ng+skvtwveh+++++r++h EPS72090.1 348 TGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDGTWAVVDVSLDNLRPTS----ISRCRRRPSGCLIQELPNGYSKVTWVEHMEVDDRSVH 442 *******************************************************976....8************************************ PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 ++++lv+sgla+ga++wvatl+rqce+ EPS72090.1 443 TIYKPLVSSGLAFGARRWVATLDRQCER 470 **************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-22 | 46 | 113 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.18E-19 | 46 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.568 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-18 | 60 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.70E-18 | 62 | 120 | No hit | No description |
Pfam | PF00046 | 2.1E-17 | 62 | 117 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 46.313 | 241 | 473 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.04E-36 | 242 | 472 | No hit | No description |
CDD | cd08875 | 4.97E-128 | 245 | 469 | No hit | No description |
SMART | SM00234 | 8.4E-68 | 250 | 470 | IPR002913 | START domain |
Pfam | PF01852 | 3.0E-57 | 251 | 470 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.5E-5 | 347 | 460 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.21E-26 | 490 | 721 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MFQPNMFDGG GGSGHLLEIS GHKTPENELD FIRDDEYESK SGTDIMEGNS GDDQDPDQRP 60 KKKRYHRHTQ HQIQEMESFF KECPHPDDKQ RKELGRRLGL EPLQVKFWFQ NKRTQMKAQH 120 ERSENTQLRN ENEKLRAENI RYKEALGNAT CPNCGGPAAI GEMSFDEQHL RIENARLREE 180 IDRISGVAAK YVGKQTLPFP HLPPGASRTL DLGVGSFGPQ SGITGEIYGA SDLLRSVSGP 240 SDADKPVIIE LAVAAMEELI RMAHSGEPLW ISNTENSCET LSEEDYVRVF PRGIGPRPLG 300 LKSEASRESA VVIMNHVNLV EILMDVNQWS SVFSSIVSRA MTLEVLSTGV AGNYNGALQV 360 MTAEFQVPSP LVPTRENYFV RYCKQHGDGT WAVVDVSLDN LRPTSISRCR RRPSGCLIQE 420 LPNGYSKVTW VEHMEVDDRS VHTIYKPLVS SGLAFGARRW VATLDRQCER LASVMANNIS 480 AGDVGVISSP EGRKSMLKLA ERMVMSFCTG VGASTAHTWT TLSGSGADDV RVMTRKSMDD 540 PGRPPGIVLS AATSFWLPIP PKRVFDFLRD ENSRSEWDIL SNGGLVQEMA HIANGRDPGN 600 AVSLLRVNSA NSSQSNMLIL QESCTDSTGS YVIYAPVDIV AMNVVLSGGD PDYVALLPSG 660 FAILPDGPNG QATGIPDVGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIKCTVERI 720 KGAVLCEG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096101.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_011096102.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_011096103.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_020554106.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_020554107.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | S8CYM2 | 0.0 | S8CYM2_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.M01293.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
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