PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 728aa    MW: 79545.9 Da    PI: 5.6579
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72090.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.9e-2062117156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  EPS72090.1  62 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 117
                 688999***********************************************998 PP

2START218.81.8e-682504701206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a ++ep+W +      e + ++++++ f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW+  +     +a+tlev+s
  EPS72090.1 250 ELAVAAMEELIRMAHSGEPLWISNTenscETLSEEDYVRVFPRGIGprplgLKSEASRESAVVIMNHVNLVEILMDVN-QWSSVFSsivsRAMTLEVLS 347
                 57899******************99899999999999999999999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ +    + R++++pSg+li++++ng+skvtwveh+++++r++h
  EPS72090.1 348 TGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDGTWAVVDVSLDNLRPTS----ISRCRRRPSGCLIQELPNGYSKVTWVEHMEVDDRSVH 442
                 *******************************************************976....8************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                  ++++lv+sgla+ga++wvatl+rqce+
  EPS72090.1 443 TIYKPLVSSGLAFGARRWVATLDRQCER 470
                 **************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-2246113IPR009057Homeodomain-like
SuperFamilySSF466894.18E-1946119IPR009057Homeodomain-like
PROSITE profilePS5007116.56859119IPR001356Homeobox domain
SMARTSM003892.5E-1860123IPR001356Homeobox domain
CDDcd000864.70E-1862120No hitNo description
PfamPF000462.1E-1762117IPR001356Homeobox domain
PROSITE profilePS5084846.313241473IPR002913START domain
SuperFamilySSF559611.04E-36242472No hitNo description
CDDcd088754.97E-128245469No hitNo description
SMARTSM002348.4E-68250470IPR002913START domain
PfamPF018523.0E-57251470IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-5347460IPR023393START-like domain
SuperFamilySSF559611.21E-26490721No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MFQPNMFDGG GGSGHLLEIS GHKTPENELD FIRDDEYESK SGTDIMEGNS GDDQDPDQRP  60
KKKRYHRHTQ HQIQEMESFF KECPHPDDKQ RKELGRRLGL EPLQVKFWFQ NKRTQMKAQH  120
ERSENTQLRN ENEKLRAENI RYKEALGNAT CPNCGGPAAI GEMSFDEQHL RIENARLREE  180
IDRISGVAAK YVGKQTLPFP HLPPGASRTL DLGVGSFGPQ SGITGEIYGA SDLLRSVSGP  240
SDADKPVIIE LAVAAMEELI RMAHSGEPLW ISNTENSCET LSEEDYVRVF PRGIGPRPLG  300
LKSEASRESA VVIMNHVNLV EILMDVNQWS SVFSSIVSRA MTLEVLSTGV AGNYNGALQV  360
MTAEFQVPSP LVPTRENYFV RYCKQHGDGT WAVVDVSLDN LRPTSISRCR RRPSGCLIQE  420
LPNGYSKVTW VEHMEVDDRS VHTIYKPLVS SGLAFGARRW VATLDRQCER LASVMANNIS  480
AGDVGVISSP EGRKSMLKLA ERMVMSFCTG VGASTAHTWT TLSGSGADDV RVMTRKSMDD  540
PGRPPGIVLS AATSFWLPIP PKRVFDFLRD ENSRSEWDIL SNGGLVQEMA HIANGRDPGN  600
AVSLLRVNSA NSSQSNMLIL QESCTDSTGS YVIYAPVDIV AMNVVLSGGD PDYVALLPSG  660
FAILPDGPNG QATGIPDVGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIKCTVERI  720
KGAVLCEG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLS8CYM20.0S8CYM2_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]