PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS71868.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | CPP | ||||||||
Protein Properties | Length: 186aa MW: 20298 Da PI: 8.4055 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 53.9 | 3.6e-17 | 20 | 58 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag++C + C C dC+Nk EPS71868.1 20 CKRCNCKKSKCLKLYCECFAAGVYCVDLCACVDCFNKPA 58 89**********************************976 PP | |||||||
2 | TCR | 53.9 | 3.6e-17 | 105 | 143 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+C+N EPS71868.1 105 RHKRGCNCKKSGCLKKYCECYQGGVGCSVNCRCEGCRNA 143 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.0E-16 | 18 | 59 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.449 | 19 | 145 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.3E-13 | 21 | 56 | IPR005172 | CRC domain |
SMART | SM01114 | 4.0E-18 | 105 | 146 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 107 | 143 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
SSSPKKKRRR GEQSGDGEGC KRCNCKKSKC LKLYCECFAA GVYCVDLCAC VDCFNKPAHE 60 GTVLATRKQI ESRNPLAFAP KVIRGSSDQP SETREDSSKT PASARHKRGC NCKKSGCLKK 120 YCECYQGGVG CSVNCRCEGC RNAFGRKDGS HVVADNEEDE MEGVKTTEEL ESSAAILETP 180 LGGRRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-20 | 21 | 142 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-20 | 21 | 142 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 9 | KKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00044 | PBM | Transfer from AT3G22760 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022878826.1 | 7e-89 | protein tesmin/TSO1-like CXC 2 isoform X2 | ||||
Swissprot | Q8L548 | 2e-84 | TCX3_ARATH; Protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | S8E7R7 | 1e-131 | S8E7R7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.G00370.1.p | 4e-85 | (Erythranthe guttata) | ||||
STRING | XP_006406130.1 | 1e-85 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6980 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 7e-87 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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