PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71826.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 401aa MW: 43986.7 Da PI: 10.6322

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71826.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	176	198	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg++F r++ + H + H EPS71826.1 176 VCQKCGEHFVRWEAVEEHHLSkH 198 7*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	177	198	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.73E-17	200	400	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.0E-7	225	398	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
KAMPPIWFRV KKSFHCKTDP RDFHEPRGGH RKRISTKKSS RVRCGCSRSI ANLKDVMING 60 SKRHTAKPAI CSPRSIGSSE LLNPITHEVV LSDSTCELKI RTAIIGGGDG GGFEGTLKPG 120 TPGPGRIHGG FKQYQAQGSP IRRTSSSLSR RSHGFGGLSP RQRTSFGVDS RGGAVVCQKC 180 GEHFVRWEAV EEHHLSKHAV TELLEGESSR RIVEIICRAN SGRSENGIER ILKVHNMQKT 240 LAQFEEYREL VKIKASKLTK KHPRCLADGN ELLRFHGAAV ECRLGQKGSS SLCISEKCRV 300 CRILRYGFST RKEISAVFTA STSGRALESV KASGGERKAL VVCRVIAGRV HRPLENLQEM 360 VGGPTGFDSL AGKVGVQGNI EELYLLSPRA LLPCFVVIYK P

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

KAMPPIWFRV KKSFHCKTDP RDFHEPRGGH RKRISTKKSS RVRCGCSRSI ANLKDVMING  60
SKRHTAKPAI CSPRSIGSSE LLNPITHEVV LSDSTCELKI RTAIIGGGDG GGFEGTLKPG  120
TPGPGRIHGG FKQYQAQGSP IRRTSSSLSR RSHGFGGLSP RQRTSFGVDS RGGAVVCQKC  180
GEHFVRWEAV EEHHLSKHAV TELLEGESSR RIVEIICRAN SGRSENGIER ILKVHNMQKT  240
LAQFEEYREL VKIKASKLTK KHPRCLADGN ELLRFHGAAV ECRLGQKGSS SLCISEKCRV  300
CRILRYGFST RKEISAVFTA STSGRALESV KASGGERKAL VVCRVIAGRV HRPLENLQEM  360
VGGPTGFDSL AGKVGVQGNI EELYLLSPRA LLPCFVVIYK P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096128.1	0.0	uncharacterized protein LOC105175392
TrEMBL	S8D355	0.0	S8D355_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.M01260.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-140	C2H2 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]