PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS71706.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 26791.7 Da PI: 7.9767 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.4e-13 | 39 | 84 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + e+ErrRR+++N ++ Lr l+P+ + Kl+ a+iL A+eY+k+Lq EPS71706.1 39 NLEAERRRRKKLNLRLYSLRALVPNiS------KLDRASILGDAIEYVKELQ 84 5689*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-17 | 33 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.891 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-10 | 39 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-16 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.7E-17 | 41 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
QNDGSLTCEN NRSDESDPND DEEENKYRRR NGKGHQAKNL EAERRRRKKL NLRLYSLRAL 60 VPNISKLDRA SILGDAIEYV KELQKQVKDL QTELEENSDD EETTKSRKRN SEIRRRNATG 120 GDEIRFKRSC SKANTEHAND NKVQQMEPQV EVFQLDRSEF FVKIFCEHKP GGFLRLMEAL 180 SSLKLEVTNV NASRHTCLVS STFKVEQRSD DNVQADHVKE SLLELTRNPS R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-15 | 32 | 93 | 2 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-15 | 32 | 93 | 2 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-15 | 32 | 93 | 2 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-15 | 32 | 93 | 2 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-15 | 32 | 93 | 2 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-15 | 32 | 93 | 2 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-15 | 32 | 93 | 2 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-15 | 32 | 93 | 2 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 48 | RRRNGKGHQAKNLEAERRRRKK |
2 | 42 | 49 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012849922.1 | 1e-95 | PREDICTED: transcription factor ABORTED MICROSPORES | ||||
Swissprot | Q9ZVX2 | 7e-68 | AMS_ARATH; Transcription factor ABORTED MICROSPORES | ||||
TrEMBL | S8D2S6 | 1e-167 | S8D2S6_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.B01188.1.p | 4e-97 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9672 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 6e-57 | bHLH family protein |