PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS71515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 178aa MW: 20057.4 Da PI: 9.9353 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.7 | 2.8e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rq tf+kRrng+lKKA+ELSvLCd++v viifs++gk+y y++ EPS71515.1 9 KRIEDKSARQATFTKRRNGLLKKAKELSVLCDVDVGVIIFSTRGKFYHYCN 59 79***********************************************85 PP | |||||||
2 | K-box | 22.9 | 3.5e-09 | 118 | 150 | 45 | 77 |
K-box 45 sLslkeLqqLeqqLekslkkiRskKnellleqi 77 +Lsl eL Le+qLe +l +iR+ K l+++ + EPS71515.1 118 QLSLTELVYLEKQLEAALMQIRAEKVTLIINTL 150 79************************9998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.338 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.09E-33 | 2 | 61 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-28 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MGRKKLEIKR IEDKSARQAT FTKRRNGLLK KAKELSVLCD VDVGVIIFST RGKFYHYCNT 60 SRLSDILLQH RSHVENGDRT IGTDHSRVQN SKSPGAIKCS DLLDIVDKKF GKTCVEKQLS 120 LTELVYLEKQ LEAALMQIRA EKVTLIINTL AFSSLWSIIF RSFCAAAAAH CHPLNFCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-19 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 6e-19 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 6e-19 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 6e-19 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086821.1 | 8e-53 | MADS-box transcription factor 7-like isoform X1 | ||||
Refseq | XP_011086823.1 | 5e-53 | MADS-box transcription factor 7-like isoform X3 | ||||
Refseq | XP_020551812.1 | 4e-53 | MADS-box transcription factor 7-like isoform X4 | ||||
TrEMBL | S8CX76 | 1e-128 | S8CX76_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10140.2 | 1e-31 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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