PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS71374.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | Trihelix | ||||||||
Protein Properties | Length: 451aa MW: 49084.3 Da PI: 7.4774 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.8 | 3.2e-19 | 99 | 185 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea++++ +l+rg+l++ +We+v++ + r +++s +qCk+k +nl+kr+k ++++ +++ s s++p+f+q+e EPS71374.1 99 EWSDAAIATLLEAYSDKFVQLNRGNLRGRDWEDVAAIVseRCDNLTKSVEQCKNKVDNLKKRFKLERNRLSQG-GLSISHWPWFKQME 185 5*************************************7777899***************************9.89999********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.3E-22 | 97 | 186 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 2.0E-58 | 237 | 451 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 1.44E-45 | 243 | 451 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 1.06E-103 | 245 | 451 | No hit | No description |
Pfam | PF00696 | 1.2E-18 | 246 | 451 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016740 | Molecular Function | transferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
VSVILTPSMA SCDDDFSLLD NHDNPNSTQP TAVAPAAQTP PYQIIPYDHD SDPFDSEPDP 60 NSLTGKRPGD RDDIQGSSTK RNRLHSTGGS VDYRKDREEW SDAAIATLLE AYSDKFVQLN 120 RGNLRGRDWE DVAAIVSERC DNLTKSVEQC KNKVDNLKKR FKLERNRLSQ GGLSISHWPW 180 FKQMEQVVGN SLAAKAVAED EKSSGGCSSA SFPTRHTKRL VTTTHNPGSQ INTIKPKQLN 240 NLRWRRVVFK ISGAALAGSA PNNIDPKVAM LIAREVSIAC RVGVEVAIVV GGRNFFCGDT 300 WVTSTGLDRC TAYQIGMMAT VMNSILLQSA LEKLGVQTRV QSAFAMPEVA EPYSRQRAIR 360 HLEKGRVVIF GGIGAGTGNP LFSTDTAAAL RASEIHADAV LKGTNVDSVF VCDSRNGGLA 420 AEHISFRELA SRGTSPMDMM AVTFCEENGI P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
3ek5_B | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
3ek5_C | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
3ek5_D | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
3ek5_E | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
3ek5_F | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
3ek6_A | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
3ek6_B | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
3ek6_C | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
3ek6_D | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
3ek6_E | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
3ek6_F | 4e-52 | 239 | 451 | 4 | 214 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101478.1 | 0.0 | uncharacterized protein LOC105179524 | ||||
TrEMBL | S8CVI7 | 0.0 | S8CVI7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.L01743.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8728 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.2 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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