PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71329.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

CPP

Protein Properties

Length: 481aa MW: 52031.8 Da PI: 7.1998

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71329.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45	2.2e-14	125	164	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCf++g +C+ C+C +C+N+ e+ EPS71329.1 125 KQKQCNCKNSRCLKLYCECFSSGIYCDG-CNCVNCHNNVEN 164 89************************.******9875 PP
2	TCR	51.6	1.9e-16	209	248	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e EPS71329.1 209 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 248 589***********************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.5E-17	124	164	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.3	125	249	IPR005172	CRC domain
Pfam	PF03638	1.9E-11	126	161	IPR005172	CRC domain
SMART	SM01114	6.2E-20	209	250	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.3E-12	212	247	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MEQREGKALP QKNNPSESSS NVVVDLPARK LVRQLDFTVF GGGTPGPDLK QLPNPSLPSQ 60 PHLPQLVRHS QPPLQTPQMM VMTMQQPQLT APPTHSAILP HTKPESPRPW VKQNLNEVKD 120 GTPKKQKQCN CKNSRCLKLY CECFSSGIYC DGCNCVNCHN NVENEAARCE AVGATLERNP 180 NAFRPKIASS PLGARDHREE AAEGLVSGKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK 240 CMDCKNYEGS EERQALFHGD HANNMMFIQQ AANAAITGAI GSSGFGSPPF NKKRKGQDLF 300 FGSSLKDPTN KLGQQLQQVD NNTSKASTIS SSSSPTDRPG NLGSSAPSKF TYRSLLADII 360 HQQDLKELCS VLVVHSRHAA NMLAEEGGAE NEPENNAVGV RSEDECCIPA GAASPSTLAL 420 MCDEEEEETM FGVVGISKSP PPPPPPPSSS SAYGGGEQER LVLTMFRDCL NSLITLGEIK 480 G

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MEQREGKALP QKNNPSESSS NVVVDLPARK LVRQLDFTVF GGGTPGPDLK QLPNPSLPSQ  60
PHLPQLVRHS QPPLQTPQMM VMTMQQPQLT APPTHSAILP HTKPESPRPW VKQNLNEVKD  120
GTPKKQKQCN CKNSRCLKLY CECFSSGIYC DGCNCVNCHN NVENEAARCE AVGATLERNP  180
NAFRPKIASS PLGARDHREE AAEGLVSGKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK  240
CMDCKNYEGS EERQALFHGD HANNMMFIQQ AANAAITGAI GSSGFGSPPF NKKRKGQDLF  300
FGSSLKDPTN KLGQQLQQVD NNTSKASTIS SSSSPTDRPG NLGSSAPSKF TYRSLLADII  360
HQQDLKELCS VLVVHSRHAA NMLAEEGGAE NEPENNAVGV RSEDECCIPA GAASPSTLAL  420
MCDEEEEETM FGVVGISKSP PPPPPPPSSS SAYGGGEQER LVLTMFRDCL NSLITLGEIK  480
G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	5e-30	117	258	2	132	Protein lin-54 homolog
5fd3_B	5e-30	117	258	2	132	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00045	PBM	Transfer from AT4G29000	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078441.1	0.0	protein tesmin/TSO1-like CXC 5
Swissprot	Q9SZD1	1e-144	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	S8CVG4	0.0	S8CVG4_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.K00502.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2401	24	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20110.1	1e-116	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]