PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71273.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 283aa    MW: 30913.2 Da    PI: 4.6402
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71273.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19104154155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIrdp +   r r +lg+f taeeAa  +++a+  l+g
  EPS71273.1 104 KKFRGVRQRP-WGKWAAEIRDPQK---RVRLWLGTFNTAEEAAMVYDHAAITLRG 154
                 59********.**********944...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.39E-31104161No hitNo description
SuperFamilySSF541711.57E-21105162IPR016177DNA-binding domain
SMARTSM003801.4E-38105168IPR001471AP2/ERF domain
PfamPF008475.3E-12105154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-30105162IPR001471AP2/ERF domain
PROSITE profilePS5103223.433105162IPR001471AP2/ERF domain
PRINTSPR003672.6E-10106117IPR001471AP2/ERF domain
PRINTSPR003672.6E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
VKFTEHVTRT TVVGARPECP GSSARLLPRT VRISVTDEDA TDSSGDEEAG GSCGRRRVRR  60
FVNEVKIRPG IADDEGGAVK SEATAANVQK RKKSVGAGNS GGGKKFRGVR QRPWGKWAAE  120
IRDPQKRVRL WLGTFNTAEE AAMVYDHAAI TLRGPDALTN FSNPAPEDKK SSGYNSGEDD  180
SDIKSPSSVL RFVSPAVSQS NDAVCQEENF SIFPSHEDFF PDFENPLPVP DLFDQPDFFQ  240
LDLSADMLIG SCTDIGFVSQ SWPSDDYFQD FGDILCSDPL VVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20103161362ATERF1
3gcc_A1e-20103161362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080873.11e-103ethylene-responsive transcription factor CRF2
TrEMBLS8E6380.0S8E638_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.E01228.1.p9e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.19e-49cytokinin response factor 4
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]