PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71135.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Trihelix

Protein Properties

Length: 298aa MW: 34014.4 Da PI: 10.4249

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71135.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.1	3.1e-15	11	101	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ + +++Liea + +l+rg+l++++W++v++ + +++r+ +qCk++++ ++k+yk +k+ +++ + + +s++p+f +l+ EPS71135.1 11 CWSMEATRTLIEAWGSHYLELNRGNLRQKHWQAVADTVnarhgVTAKLQRTDVQCKNRIDTIKKKYKIEKAKSSQSRGRYRSSWPHFGSLD 101 7***********************************97776667789********************999999999***9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.6E-25	9	103	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-4	10	77	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
RNPSFPSRED CWSMEATRTL IEAWGSHYLE LNRGNLRQKH WQAVADTVNA RHGVTAKLQR 60 TDVQCKNRID TIKKKYKIEK AKSSQSRGRY RSSWPHFGSL DSLIGNQPKP AGKNIAGNGH 120 SRTLHRRDSS SSEKSPSPPP RPQRDDSPIA RPRGKVPAAR NLQSWSVPVA PRSKRTGPGP 180 GALTERNFSV MAAAAAAMEA EEEEEDEEYE DEEDDKPTKA WRCPPPPATK RRQERGYKKL 240 AEAIGRLAEI YEKVEASKHR QMVELEKQRI QFAKELELQR MRMFVESQVE LEKLKRAK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022872518.1	8e-96	trihelix transcription factor ASIL2-like
TrEMBL	S8CWD6	0.0	S8CWD6_9LAMI; 6b-interacting protein 1 (Fragment)
STRING	Migut.M00262.1.p	6e-89	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-31	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]